DY258464

Overview
NameDY258464
Unique NameDY258464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.885e-17
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL 389
            V++D A YLRKV+L  Y  YG+L +ALE MF               + +++  ++ +L    E+V TYEDKDGD MLVGDVP  MF++SCKR+++MK  DAI L
Sbjct:   91 VALDGAAYLRKVDLGMYDCYGQLFTALENMF---------------QGIITICRVTELERKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAIGL 179          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.885e-17
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAME-KSKIRN 425
            V+MD     RKV++  +++Y  L+  LE+MF   T   C       RE +   +L D    S++VLTYEDK+GDWMLVGDVP  MFI+S KRL+IM  S+A  LAP+  E K + RN
Sbjct:  129 VNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTC-------REKVKPLRLLD--GSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQRN 236          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.417e-16
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDA 380
            VSMD  PY+RK++L +  +Y  L + LE +F C  IG           +  E K        EY++ YEDKD DWMLVGDVP +MF +SCKRL+I+K SDA
Sbjct:   98 VSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIG-----------VAKEGKK------CEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDA 181          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.463e-16
Identity = 49/102 (48.04%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFS-CFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDA 380
            VSMD APYLRKV+L     Y EL  AL+ +F+ CF+                 +   D     ++ + YEDKDGD MLVGDVP EMFI SCK+L+IMKGS+A
Sbjct:  134 VSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFS-----------------ATASDGCSDGQFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 7.613e-16
Identity = 47/99 (47.47%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGS 374
            VS+D A +LRK++L  Y  Y +L+SAL+ +F C+                      D L  SE V  YEDKDGDWML GDVP EMF+ SCKRL+IMK S
Sbjct:   79 VSVDGAAFLRKIDLEMYKCYQDLASALQILFGCYI------------------NFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRS 159          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 9.943e-16
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMF---SCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSK 416
            V+MD     RKV+L  +++Y  L+  LE MF   +  T+G       P R          LL GS E+VLTYEDK+GDWMLVGDVP  MFI+S KRL++MK S+A  LA +  E ++
Sbjct:  134 VNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLR----------LLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNE 240          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.177e-14
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSD 377
            ++MD  P  RKV+L  Y  Y +LS+A++K+F     G   +  A        +   +++ G EY L YED +GD MLVGDVP +MFI + KRL+++K SD
Sbjct:  123 INMDGVPIGRKVDLAAYGGYAQLSAAVDKLFR----GLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.125e-14
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSE-YVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALA 392
            V+MD  P  RK++L  +  Y  LS+ LE+MF    +G   + E  G     E+ +K L  GS   VLTYEDK+GDWMLVGDVP  MFI S +RL+IMK S+A   A
Sbjct:  141 VTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGS-RTLETDGH---METPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.536e-13
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSD 377
            ++MD  P  RKV+L  Y +Y +LS  ++K+F      Q    +  G E      +  LL G  E+ LTYED +GD MLVGDVP +MF+ S KRL+++K S+
Sbjct:  156 INMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEE----KPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSE 252          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.032e-13
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCF-------TIGQCGSHEAPGREMLSESK-LKDLLHGS--EYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSK 416
            V+MD  P  RKV+L  +  YGELS+A++++F          T+    +  A G     E + +  LL G   EY L YED +GD MLVGDVP  MFI + +RL++++ SD  A   +A  + +
Sbjct:  102 VNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSDLNASTIRAGSRKR 224          
The following BLAST results are available for this feature:
BLAST of DY258464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IAA15_ARATH6.885e-1746.15Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]
IAA12_ARATH6.885e-1746.15Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA6_ARATH3.417e-1646.53Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA24_ORYSJ4.463e-1648.04Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA5_ARATH7.613e-1647.47Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]
IAA13_ARATH9.943e-1645.30Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA2_ORYSJ4.177e-1441.00Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA11_ARATH7.125e-1448.11Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA26_ARATH3.536e-1341.58Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA16_ORYSJ6.032e-1337.40Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DF04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258464 ID=DY258464; Name=DY258464; organism=Citrus clementina; type=EST; length=1305bp
TAAGACACTGGCAGCCACATCAATAATTCCTGAGGAATTACACCGTTGCC
GCTGCTCTGGAGCTCTTTTTATTACTAGTTAGCATGGACAGAGCTCCTTA
TTTGAGGAAAGTAAATTTAACAACATACACCAATTATGGGGAACTATCTT
CTGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCA
CATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAAGATCT
TTTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACT
GGATGCTCGTTGGGGATGTGCCGCGGGAGATGTTTATTGATTCATGCAAG
CGATTAAAGATCATGAAAGGTTCTGATGCCATTGCCTTAGCTCCCAAGGC
AATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGG
TGCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAT
AAGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGCGGTTCAG
TTGTGTATCCTGTTTGTTAACATGAGGCTTGCGTTACTTGTTTACGTTCG
GAAGAAGTCTATGTTTATGATATGATTGATGTCAAACCCTGTTGAAACAC
AAACAAATTTAGGATTCGTGGAAGTACACATCTATCTAGTGACTGGGATC
TTAATAAAAAAATAAAAAAACAAAAAAAAACCCCACTCTCTTGCACAACT
TTGGCATTAAAAGAAAGGATCGCTAAACAATATTCCTGACACACACCCCC
CCCTCTCCAACCAACTTCAAAATCCTAATTTGCCTCACCACGAACCAACC
CCAACCCCGGCTCCCAATTAACTAGGCCAAACACTCATACCCCGCAACTC
CGCGCCCTGGTCCCCAATATCAGAACTACAACTTCCCCCTCAACAAACAC
ACTCCACCCCTAACCCCAAACACCCCTCCTCCCTTTCCACTGTCTTCTCC
CCTAATTTTTCTCCCTCCACTTCCCCCCCCCCTCACCCCCCCGACATAAC
TTCGCTTTCATATTGTCTAGGAATCACCCACATCGCGCAGCACTTTCCCA
CTACGACCACCTACCTCCTCCACATCCTACCCCGCTCTTCACCTCCTATA
CCCTCCTCCCCCTACCCCACTACACTCACTTTACCTATTTATATTCCCAC
CCCACTACACACCCAGTCTTACTAATNAAACCCGTCTCCCAAAATACATT
CTCCCACCACCACCACCTACCCTTCTTACGCANACCGTCAGTACGACCAG
TGACC
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