DY258567

Overview
NameDY258567
Unique NameDY258567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1244
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_DEHSB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Dehalococcoides sp. (strain BAV1) GN=ispG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.244e-12
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL-RVAECFDKIRVNPGNFAD 651
            RR++  + +GN+ IG   PI VQ+MT  DT+++  T+ ++  + + G +++R+ +     A A   I+         IP+VADIHF   +AL  ++   D +R+NPGN  D
Sbjct:    4 RRQSTEIRLGNLTIGGSAPISVQSMTKTDTRNIPATIAQIKELEECGCEIIRLAIPDMEAASALKSIR-----PKVKIPIVADIHFDYRLALASLSAGVDGLRLNPGNIGD 109          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_SALAI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Salinispora arenicola (strain CNS-205) GN=ispG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.817e-11
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            RR +R +MVG V +G   P+ VQ+MTT  T DV  T++++  +   G  +VR+ V  + + +A        + +   +P++ADIHF P       E     +RVNPGN
Sbjct:   19 RRASRQIMVGPVPVGGGAPVSVQSMTTTLTADVNATLQQIAELTAAGCQIVRVAVPSQDDVEAL-----PAIARKSQLPVIADIHFQPRYVFAAIEAGCAAVRVNPGN 121          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BORPE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bordetella pertussis GN=ispG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.817e-11
Identity = 49/167 (29.34%), Postives = 73/167 (43.71%), Query Frame = 1
Query:  322 RRKTRTVMVG----NVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR TR V V      V +G    + VQ+MT  DT D   T  +V  +A  G+++VRITV     A     I+  L +    +PLV D H+     L      A+   K R+NPGN    + +                  ++ F+ ++E   ++ + VR G N GSL
Sbjct:   24 RRATRAVRVQWGGRTVTVGGNASVVVQSMTNTDTADAVATAIQVKELAQAGSEIVRITVNTPEAAREVATIREQLDRMGVEVPLVGDFHYNGHKLLTQFPECAQALSKYRINPGNMGGGKQR------------------DDNFAQMIEVACRHDKPVRIGVNWGSL 172          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BORPA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bordetella parapertussis GN=ispG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.817e-11
Identity = 49/167 (29.34%), Postives = 73/167 (43.71%), Query Frame = 1
Query:  322 RRKTRTVMVG----NVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR TR V V      V +G    + VQ+MT  DT D   T  +V  +A  G+++VRITV     A     I+  L +    +PLV D H+     L      A+   K R+NPGN    + +                  ++ F+ ++E   ++ + VR G N GSL
Sbjct:   24 RRATRAVRVQWGGRTVTVGGNASVVVQSMTNTDTADAVATAIQVKELAQAGSEIVRITVNTPEAAREVAAIREQLDRMGVEVPLVGDFHYNGHKLLTQFPECAQALSKYRINPGNMGGGKRR------------------DDNFAQMIEVACRHDKPVRIGVNWGSL 172          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BORBR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bordetella bronchiseptica GN=ispG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.817e-11
Identity = 49/167 (29.34%), Postives = 73/167 (43.71%), Query Frame = 1
Query:  322 RRKTRTVMVG----NVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR TR V V      V +G    + VQ+MT  DT D   T  +V  +A  G+++VRITV     A     I+  L +    +PLV D H+     L      A+   K R+NPGN    + +                  ++ F+ ++E   ++ + VR G N GSL
Sbjct:   24 RRATRAVRVQWGGRTVTVGGNASVVVQSMTNTDTADAVATAIQVKELAQAGSEIVRITVNTPEAAREVAAIREQLDRMGVEVPLVGDFHYNGHKLLTQFPECAQALSKYRINPGNMGGGKRR------------------DDNFAQMIEVACRHDKPVRIGVNWGSL 172          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_SALTO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.373e-11
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            RR +R +MVG+V +G   P+ VQ+MTT  T DV  T++++  +   G  +VR+ V  + +  A        + +   +P++ADIHF P       E     +RVNPGN
Sbjct:   19 RRASRQIMVGSVPVGGGAPVSVQSMTTTLTADVNATLQQIAELTAAGCQIVRVAVPSQDDVAAL-----PAIARKSQLPVIADIHFQPRYVFAAIEAGCAAVRVNPGN 121          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_THEAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermosipho africanus (strain TCF52B) GN=ispG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.047e-11
Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  331 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T+ + + NV IG ++ I +Q+MT   T+D+  T++++  + + G +LVR++      A A        + K   IP++ADIHF   +A+  +     K+R+NPGN              +DE  KE          +++  K+Y   +R G N GS+
Sbjct:    2 TKEINIKNVKIGGKNSIVIQSMTNTKTEDIKSTLQQIQNLYNAGCELVRVSAPTFEAAKAL-----KTITKESPIPVIADIHFDYKLAIESIKNGASKVRINPGNIG------------NDEKVKE----------IIKVAKEYNVPIRVGANSGSI 131          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_MYCGA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycoplasma gallisepticum GN=ispG PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.904e-11
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADR 654
            R KT+ V VG+V IG ++ I +Q+MT   TK V  +++E+  +  +GADLVRI V    +  A   I+  + Q     P++ADIHF P  A+   +    KIR+NPGN   +
Sbjct:    4 RTKTKKVFVGDVQIGGQNKIVLQSMTIAKTKHVKKSLKEINDLVKEGADLVRIAVFDDADKRA---IRKVVDQS--PCPIIADIHFNPDYAIAAIKAGCKKIRLNPGNIKSK 110          
The following BLAST results are available for this feature:
BLAST of DY258567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
ISPG_DEHSB6.244e-1233.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SALAI1.817e-1134.264-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BORPE1.817e-1129.344-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BORPA1.817e-1129.344-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BORBR1.817e-1129.344-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SALTO2.373e-1134.264-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THEAB4.047e-1128.034-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCGA6.904e-1138.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258567 ID=DY258567; Name=DY258567; organism=Citrus clementina; type=EST; length=1244bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAAGTACGGAAGGGCAGTGCGTAATGGGACTAACCATGGGAGCCTTTC
GATCGTATCATGAACTAACATGGGGATTCTCCTAGGGGAATGGGTTAATC
TGGCTTTTAATTTGCAAAAATCCGCCGAAAATTGACTTCCTTAATTTTGT
CTTTTCAATGAAAACCAACAAACCCAGTCGTAATGGTCCAAGCAAACCGT
CCGGTGTAACCGAAAGGTAAGTTTCTGGGTTGGAATTACCCTTTCACTTT
GGGAATGACCAACCCCGGGAAAGGGGAAAAAGGGTCCGAAAAAAACCTCC
CATTGGAAATTGGTACCCCTTCTTCAGAGTTGGTTTTGGGGTAAAAAACT
CAGGGGGTTTCCCTTTTAAGCACCCCCCCCAAAAAAAAAAGAAAATGTCC
CCCCTTTTTAAAAAAAGGGGTTCCGCCCCACCCCCTTGTTGAATAAAAAA
AAAACACACCTGCTTTAATTTCCTTCCTCCCACAAAAAAGGAAG
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