DY258567

Overview
NameDY258567
Unique NameDY258567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1244
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEA8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispG PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.359e-21
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  304 SIHKT---VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            SIH     +RRK+R + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVAE   D +R+NPGN
Sbjct:    2 SIHSASPIIRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_NITWN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ispG PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.359e-21
Identity = 63/165 (38.18%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGN--FADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R KT  VMVGNVA+G   PI VQ+MT  DT D+ GT+ +V  ++  G+++VR+TV     A A   I++ L ++    PL+ D H+     L      AE  DK R+NPGN  F D+R                    ++ F+ +VE   KYG+AVR G N GSL
Sbjct:   18 RHKTTQVMVGNVAVGGGAPIVVQSMTNTDTADIEGTIAQVAALSRAGSEMVRMTVDRDEAAAAVPHIRDGLRKRGITTPLIGDFHYIGHKLLADHPSCAEALDKYRINPGNVGFKDKR--------------------DKQFTDIVETAIKYGKAVRIGANWGSL 162          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_THETH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermus thermophilus GN=ispG PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.611e-21
Identity = 61/164 (37.20%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  319 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            +RR T TV VG V IG  HPI VQ+MT   T+DV  T  +V+ +   G+++VR+TV  +  A A  EIK  L+ +   +PLV D HF   + LR    +AE  DK R+NPG     R                  H +E F+ ++      G+ VR G N GSL
Sbjct:    4 MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGR------------------HKDEHFAEMIRIAMDLGKPVRIGANWGSL 149          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_THET2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ispG PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.611e-21
Identity = 61/164 (37.20%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  319 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            +RR T TV VG V IG  HPI VQ+MT   T+DV  T  +V+ +   G+++VR+TV  +  A A  EIK  L+ +   +PLV D HF   + LR    +AE  DK R+NPG     R                  H +E F+ ++      G+ VR G N GSL
Sbjct:    4 MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGR------------------HKDEHFAEMIRIAMDLGKPVRIGANWGSL 149          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_THET8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ispG PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.255e-20
Identity = 61/164 (37.20%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  319 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            +RR T TV VG V IG  HPI VQ+MT   T+DV  T  +V+ +   G+++VR+TV  +  A A  EIK  L+ +   +PLV D HF   + LR    +AE  DK R+NPG     R                  H +E F+ ++      G+ VR G N GSL
Sbjct:    4 MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGAEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGR------------------HKDEHFAEMIRIAMDLGKPVRIGANWGSL 149          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEA7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=ispG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.639e-20
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  304 SIHKT---VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            SIH      RRK+R + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVAE   D +R+NPGN
Sbjct:    2 SIHSASPITRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEMY (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.141e-20
Identity = 66/169 (39.05%), Postives = 89/169 (52.66%), Query Frame = 1
Query:  295 YCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            +CES  K  RR +R + VG+V +G + PI VQ+MT  DT DVA TV ++ R+ D GAD+VR++V     A+A   IK     +   +PLVADIHF   +ALRVAE   D +R+NPGN                         E+    +VE  +  G  +R G N GSL
Sbjct:    2 HCESPIK--RRLSRKIWVGSVPVGGDAPIAVQSMTNTDTNDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGRIK-----QQVRVPLVADIHFDYQIALRVAELGVDCLRINPGNIGR----------------------EDRVKAVVEAARDKGIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_NITHX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ispG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.141e-20
Identity = 63/165 (38.18%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGN--FADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R KT  VMVG++A+G   PI VQ+MT  DT DV GT+ +V  ++  G+++VRITV     A A   I++ L ++    PL+ D H+     L      AE  DK R+NPGN  F D+R                    ++ F+ +VE   KYG+AVR G N GSL
Sbjct:   18 RHKTTQVMVGSIAVGGGAPIVVQSMTNTDTADVEGTIAQVAALSRAGSEMVRITVDRDEAAAAVPHIRDGLRKRGIATPLIGDFHYIGHKLLADHPACAEALDKYRINPGNVGFKDKR--------------------DKQFTDIVEMAIKYGKAVRIGANWGSL 162          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_THETN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.796e-20
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  319 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            +R+ TR + +GN  IG  +PI VQ+MT  DT DV  TVE++ R+ ++G D++R+ V  ++ A +  EIK     K+ NIPLVADIHF   +A++ +    DKIR+NPGN                         EE    +VE  K+ G  +R G N GSL
Sbjct:    4 MRKLTREIKIGNKKIGGNNPILVQSMTNTDTHDVEKTVEQIKRLEEEGCDIIRVAVPDEKAAYSIKEIK-----KHINIPLVADIHFDYRLAIKSIENGADKIRINPGNIGR----------------------EENIKKVVEAAKERGIPIRIGVNAGSL 137          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_RHOPB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=ispG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.796e-20
Identity = 64/163 (39.26%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R KT  VMVG+VA+G   PI VQ+MT  DT DVAGTVE+V  +   G++LVRITV  +  A A   I++ L ++    PL+ D H+     L      AE  DK R+NPGN   +  +  Q                  F+ +VE   K  +AVR G N GSL
Sbjct:   18 RHKTTQVMVGDVAVGGGAPIVVQSMTNTDTADVAGTVEQVAALTRAGSELVRITVDREEAAAAVPHIRDALRKRGITTPLIGDFHYIGHKLLADYPACAEALDKYRINPGNVGFKNKRDSQ------------------FADIVEIAIKNNKAVRIGANWGSL 162          
The following BLAST results are available for this feature:
BLAST of DY258567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
ISPG_PSEA87.359e-2148.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NITWN7.359e-2138.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THETH9.611e-2137.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THET29.611e-2137.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THET81.255e-2037.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEA71.639e-2048.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEMY2.141e-2039.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NITHX2.141e-2038.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THETN2.796e-2037.894-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHOPB2.796e-2039.264-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258567 ID=DY258567; Name=DY258567; organism=Citrus clementina; type=EST; length=1244bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAAGTACGGAAGGGCAGTGCGTAATGGGACTAACCATGGGAGCCTTTC
GATCGTATCATGAACTAACATGGGGATTCTCCTAGGGGAATGGGTTAATC
TGGCTTTTAATTTGCAAAAATCCGCCGAAAATTGACTTCCTTAATTTTGT
CTTTTCAATGAAAACCAACAAACCCAGTCGTAATGGTCCAAGCAAACCGT
CCGGTGTAACCGAAAGGTAAGTTTCTGGGTTGGAATTACCCTTTCACTTT
GGGAATGACCAACCCCGGGAAAGGGGAAAAAGGGTCCGAAAAAAACCTCC
CATTGGAAATTGGTACCCCTTCTTCAGAGTTGGTTTTGGGGTAAAAAACT
CAGGGGGTTTCCCTTTTAAGCACCCCCCCCAAAAAAAAAAGAAAATGTCC
CCCCTTTTTAAAAAAAGGGGTTCCGCCCCACCCCCTTGTTGAATAAAAAA
AAAACACACCTGCTTTAATTTCCTTCCTCCCACAAAAAAGGAAG
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