DY258567

Overview
NameDY258567
Unique NameDY258567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1244
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEE4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.796e-20
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR++R + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK     K  ++PLVADIHF   +ALRVAE   D +R+NPGN                         E+    +V+  +  G  +R G N GSL
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRVSVPDMDAAEAFGKIK-----KLVSVPLVADIHFDYKIALRVAELGVDCLRINPGNIGR----------------------EDRVRAVVDAARDRGIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_NITSB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=ispG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.796e-20
Identity = 64/159 (40.25%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R  T+ + VG+VA+G + PI VQ+MT + T DV  TVE++ R+   GAD+VR+ V  + +A A  EIK     K  ++PLVADIHF   +AL  AE  D IR+NPGN   +                  E I+EV    V+ CK+    +R G N GSL
Sbjct:    3 RYPTKKIFVGDVAVGGDAPISVQSMTFSKTADVEATVEQINRLHFAGADIVRVAVPEEEDAKALKEIK-----KRTSLPLVADIHFNYRLALIAAEVVDCIRINPGNIGSK------------------ERIKEV----VKACKERNIPIRIGVNAGSL 134          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEPK (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain KT2440) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.652e-20
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR++R + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK     +  ++PLVADIHF   +ALRVAE   D +R+NPGN                         E+    +V+  +  G  +R G N GSL
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRVSVPDMDAAEAFGKIK-----QRVSVPLVADIHFDYKIALRVAELGVDCLRINPGNIGR----------------------EDRVRAVVDAARDRGIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEPG (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain GB-1) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.652e-20
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR++R + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK  +     ++PLVADIHF   +ALRVAE   D +R+NPGN                         E+    +V+  +  G  +R G N GSL
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRVSVPDMDAAEAFGKIKQLV-----SVPLVADIHFDYKIALRVAELGVDCLRINPGNIGR----------------------EDRVRAVVDAARDRGIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEP1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.652e-20
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR++R + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK     +  ++PLVADIHF   +ALRVAE   D +R+NPGN                         E+    +V+  +  G  +R G N GSL
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRVSVPDMDAAEAFGKIK-----QRVSVPLVADIHFDYKIALRVAELGVDCLRINPGNIGR----------------------EDRVRAVVDAARDRGIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEPW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain W619) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.770e-20
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR++R + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK  +     ++PLVADIHF   +ALRVAE   D +R+NPGN                         E+    +V+  +  G  +R G N GSL
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVGQIQRLVDAGVDIVRVSVPDMDAAEAFGKIKQLV-----SVPLVADIHFDYKIALRVAELGVDCLRINPGNIGR----------------------EDRVRAVVDAARDRGIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_ALCBS (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ispG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.230e-20
Identity = 62/163 (38.04%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  313 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            K  RRKTR VMVGNV +G + PI VQ+MT ++T DV  TV ++ R+ D G D+VR++V     A+A  +I+     K  ++PLVADIH+   +AL VAE   D +R+NPGN                         E+    +++  K  G  +R G N GSL
Sbjct:    6 KIERRKTRQVMVGNVPVGGDAPISVQSMTNSETCDVDATVGQIRRLQDAGVDIVRVSVPSMEAAEAFGKIR-----KQVDVPLVADIHYDYKIALAVAEQGVDCLRINPGNIGR----------------------EDRIKAVIQCAKDKGLPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACCR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ispG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.136e-20
Identity = 65/162 (40.12%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  316 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T R KTR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R ADA  +IK     K  NIPLVADIHF   +AL+  E   DK+R+NPGN   R                    +E V    V   K+ G  +R G N GSL
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAADAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIGRR------------------HKVEAV----VNAAKERGIPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACC4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus cereus (strain B4264) GN=ispG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.136e-20
Identity = 65/162 (40.12%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  316 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T R KTR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R ADA  +IK     K  NIPLVADIHF   +AL+  E   DK+R+NPGN   R                    +E V    V   K+ G  +R G N GSL
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAADAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIGRR------------------HKVEAV----VNAAKERGIPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACC2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus cereus (strain G9842) GN=ispG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.136e-20
Identity = 65/162 (40.12%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  316 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T R KTR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R ADA  +IK     K  NIPLVADIHF   +AL+  E   DK+R+NPGN   R                    +E V    V   K+ G  +R G N GSL
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAADAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIGRR------------------HKVEAV----VNAAKERGIPIRIGVNAGSL 139          
The following BLAST results are available for this feature:
BLAST of DY258567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
ISPG_PSEE42.796e-2038.754-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NITSB2.796e-2040.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEPK3.652e-2038.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEPG3.652e-2038.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEP13.652e-2038.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEPW4.770e-2038.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ALCBS6.230e-2038.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACCR8.136e-2040.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACC48.136e-2040.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACC28.136e-2040.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258567 ID=DY258567; Name=DY258567; organism=Citrus clementina; type=EST; length=1244bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAAGTACGGAAGGGCAGTGCGTAATGGGACTAACCATGGGAGCCTTTC
GATCGTATCATGAACTAACATGGGGATTCTCCTAGGGGAATGGGTTAATC
TGGCTTTTAATTTGCAAAAATCCGCCGAAAATTGACTTCCTTAATTTTGT
CTTTTCAATGAAAACCAACAAACCCAGTCGTAATGGTCCAAGCAAACCGT
CCGGTGTAACCGAAAGGTAAGTTTCTGGGTTGGAATTACCCTTTCACTTT
GGGAATGACCAACCCCGGGAAAGGGGAAAAAGGGTCCGAAAAAAACCTCC
CATTGGAAATTGGTACCCCTTCTTCAGAGTTGGTTTTGGGGTAAAAAACT
CAGGGGGTTTCCCTTTTAAGCACCCCCCCCAAAAAAAAAAGAAAATGTCC
CCCCTTTTTAAAAAAAGGGGTTCCGCCCCACCCCCTTGTTGAATAAAAAA
AAAACACACCTGCTTTAATTTCCTTCCTCCCACAAAAAAGGAAG
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