DY258567

Overview
NameDY258567
Unique NameDY258567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1244
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_AQUAE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Aquifex aeolicus GN=ispG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.136e-20
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVA-LRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            +RKTR + VGNV IG + PI VQ+MT+  T DV  T+ ++ R+ + G ++VR+ V  K + +A  EI      K   +P++ADIHFAPS A L + +    IR+NPGN                         EE+   +VE+ K+ G AVR G N GSL
Sbjct:    4 KRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEI-----VKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGK----------------------EEIVREIVEEAKRRGVAVRIGVNSGSL 136          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BRASB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.388e-19
Identity = 63/165 (38.18%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGN--FADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R +T  VMVGNVA+G   PI VQ+MT  DT DV  TV +V  +A  G+++VRITV  +  A A   I+  L ++    PL+ D H+     L      AE   K R+NPGN  F D+R                    +  FS ++E   KYG+ VR G N GSL
Sbjct:   18 RHQTTKVMVGNVAVGGGAPIVVQSMTNTDTADVESTVAQVAALARAGSEMVRITVDREEAAAAVPHIREQLDKRGITTPLIGDFHYIGHKLLTDYPACAEALAKYRINPGNVGFKDKR--------------------DTQFSTIIELANKYGKPVRIGANWGSL 162          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_ANOFW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.388e-19
Identity = 67/167 (40.12%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  301 ESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            E IH   R KTR V VGN+ IG  + + +Q+MTT  T DV  TV ++ R+ + G  +VR+    +R ADA  EIK     K  NIPLV DIHF   +AL+  E   DKIR+NPGN   R                  E +E V    V+  K+ G  +R G N GSL
Sbjct:    3 EIIH---RSKTRPVRVGNITIGGNNEVVIQSMTTTKTHDVDATVAQIHRLEEAGCQIVRVACPDERAADAIAEIK-----KRINIPLVVDIHFDYRLALKAIENGADKIRINPGNIGKR------------------EKVEAV----VKAAKERGVPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_SULDN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.813e-19
Identity = 62/159 (38.99%), Postives = 85/159 (53.46%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R KT+ + VGNVA+G + PI VQ+MT + T DV  TVE++ R+   G D+VR+ V    +A A   IK  +     ++PLVADIHF   +AL  AE  D IR+NPGN   R                  E ++EV    V+ C++    +R G N GSL
Sbjct:    4 RVKTKQIFVGNVAVGGDSPISVQSMTFSKTSDVFSTVEQIKRLHFAGCDIVRVAVPEMEDALALRAIKEQI-----SLPLVADIHFNYRLALIAAEVVDCIRINPGNIGSR------------------ERVKEV----VKACQERNIPIRIGVNAGSL 135          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACWK (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.367e-19
Identity = 64/162 (39.51%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  316 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T R KTR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R A+A  +IK     K  NIPLVADIHF   +AL+  E   DK+R+NPGN   R                    +E V    V   K+ G  +R G N GSL
Sbjct:    2 TQRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAANAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIGRR------------------HKVEAV----VNAAKERGIPIRIGVNAGSL 136          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACCN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.367e-19
Identity = 64/162 (39.51%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  316 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T R KTR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R A+A  +IK     K  NIPLVADIHF   +AL+  E   DK+R+NPGN   R                    +E V    V   K+ G  +R G N GSL
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQIVRVAVPDERAANAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIGRR------------------HKVEAV----VNAAKERGIPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_MYCPE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycoplasma penetrans GN=ispG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.879e-19
Identity = 59/165 (35.76%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  307 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            ++KT+R KT+ V VGNV IG  + + +Q+MTT  T DV  TV +V  +  +G +LVRI V    +A A  E     V KN   P++ADIHF P  A++  E    K+R+NPGN  D                      EE    +++   K    +R G N GSL
Sbjct:    1 MYKTIREKTKAVYVGNVQIGGNNKVVIQSMTTTKTHDVEKTVAQVKELVREGCELVRIAVLDDEDAAAFGE-----VVKNSPCPIIADIHFNPLYAIKAIESGAAKVRLNPGNIKD----------------------EEQLRKIIDLANKKNIPIRVGVNSGSL 138          

HSP 2 Score: 22.3274 bits (46), Expect = 2.879e-19
Identity = 13/45 (28.89%), Postives = 23/45 (51.11%), Query Frame = 3
Query:  912 KPTNPVVMVQANRPV*PKGKFLGWNYPFTLGMTNPGKGEKGSEKN 1046
            K TN ++ ++A      K   + +NYP  +G+T  G    G+ K+
Sbjct:  177 KATNVLLAIEAY-----KKAAMEFNYPLHIGITEAGSLFNGTIKS 216          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_SYMTH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Symbiobacterium thermophilum GN=ispG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.092e-19
Identity = 64/160 (40.00%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RRKTR V VG V IG   PI VQ+MT  DT+DV   + ++  + + G D+VR+      EA  CF+     ++K  NIPLVAD+HF   +AL+V E   DK+R+NPGN   R                    +EEV    V  CK  G  +R G N GSL
Sbjct:    4 RRKTRAVKVGRVQIGGGAPITVQSMTKCDTRDVPEVLRQIRALEEAGCDIVRVAAP-TMEAAECFK----EIRKGCNIPLVADVHFDYRIALKVLEAGIDKLRINPGNIGAR------------------WKVEEV----VRACKDRGVPIRIGVNAGSL 136          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_GEOSW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Geobacillus sp. (strain WCH70) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.092e-19
Identity = 67/167 (40.12%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  301 ESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            E IH   R KTR V VGN+ IG  + + +Q+MTT  T DV  TV ++ R+ + G  +VR+    +R A+A  EIK     K  NIPLVADIHF   +AL+  E   DKIR+NPGN   R                  E +E V    V+  K+ G  +R G N GSL
Sbjct:    3 EIIH---RSKTRPVRVGNLTIGGNNEVIIQSMTTTKTHDVEATVAQIKRLEEAGCQIVRVACPDERAANAIPEIK-----KRINIPLVADIHFDYKLALKAIEGGADKIRINPGNIGRR------------------EKVEAV----VKAAKERGIPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_CAMJ8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.092e-19
Identity = 58/159 (36.48%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R KTR + VGNV+IG + PI VQ+M    T+D+ G++E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF  ++A+  AE  D +R+NPGN   +                  E+I+EV    V+ CK+ G  +R G NHGS+
Sbjct:    5 RFKTRQIKVGNVSIGGDAPISVQSMLFTKTRDIEGSLEQISRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGNIGSK------------------ENIKEV----VKACKERGIPIRIGVNHGSI 136          
The following BLAST results are available for this feature:
BLAST of DY258567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
ISPG_AQUAE8.136e-2038.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BRASB1.388e-1938.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANOFW1.388e-1940.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SULDN1.813e-1938.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACWK2.367e-1939.514-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACCN2.367e-1939.514-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCPE2.879e-1935.764-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYMTH3.092e-1940.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GEOSW3.092e-1940.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMJ83.092e-1936.484-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258567 ID=DY258567; Name=DY258567; organism=Citrus clementina; type=EST; length=1244bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAAGTACGGAAGGGCAGTGCGTAATGGGACTAACCATGGGAGCCTTTC
GATCGTATCATGAACTAACATGGGGATTCTCCTAGGGGAATGGGTTAATC
TGGCTTTTAATTTGCAAAAATCCGCCGAAAATTGACTTCCTTAATTTTGT
CTTTTCAATGAAAACCAACAAACCCAGTCGTAATGGTCCAAGCAAACCGT
CCGGTGTAACCGAAAGGTAAGTTTCTGGGTTGGAATTACCCTTTCACTTT
GGGAATGACCAACCCCGGGAAAGGGGAAAAAGGGTCCGAAAAAAACCTCC
CATTGGAAATTGGTACCCCTTCTTCAGAGTTGGTTTTGGGGTAAAAAACT
CAGGGGGTTTCCCTTTTAAGCACCCCCCCCAAAAAAAAAAGAAAATGTCC
CCCCTTTTTAAAAAAAGGGGTTCCGCCCCACCCCCTTGTTGAATAAAAAA
AAAACACACCTGCTTTAATTTCCTTCCTCCCACAAAAAAGGAAG
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