DY258567

Overview
NameDY258567
Unique NameDY258567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1244
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACAC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.092e-19
Identity = 64/162 (39.51%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  316 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T R KTR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R A+A  +IK     K  NIPLVADIHF   +AL+  E   DK+R+NPGN   R                    +E V    V   K+ G  +R G N GSL
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAANAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIGRR------------------HKVEAV----VNAAKERGIPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACAA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus anthracis (strain A0248) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.092e-19
Identity = 64/162 (39.51%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  316 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            T R KTR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R A+A  +IK     K  NIPLVADIHF   +AL+  E   DK+R+NPGN   R                    +E V    V   K+ G  +R G N GSL
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAANAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIGRR------------------HKVEAV----VNAAKERGIPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_GEOTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.038e-19
Identity = 67/167 (40.12%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  301 ESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            E IH   R KTR V VG++ IG  + + +Q+MTT  T DV  TV ++ R+ + G  +VR+    +R ADA  EIK     K  NIPLVADIHF   +AL+  E   DKIR+NPGN   R                  E +E V    V+  K+ G  +R G N GSL
Sbjct:    3 EIIH---RSKTRPVRVGSLTIGGNNEVIIQSMTTTKTHDVDATVAQIHRLEEAGCQIVRVACPDERAADAIPEIK-----KRINIPLVADIHFDYKLALKAIEGGVDKIRINPGNIGRR------------------EKVEAV----VKAAKERGVPIRIGVNAGSL 139          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_SACD2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.274e-19
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RRK+R +MVG+VA+G + PI +Q+MT  +T DV  TV ++ RI   GAD+VR++V     A+A   I+     K  +IPLVADIHF   +ALRVA+   D +R+NPGN                         E+    +V+K +     +R G N GSL
Sbjct:    9 RRKSRQIMVGDVAVGGDAPITIQSMTNTETTDVEATVAQIERIQMAGADIVRVSVPSMDAAEAFGAIR-----KRVSIPLVADIHFDYRIALRVADLGVDCLRINPGNIGR----------------------EKRILAVVDKARDLNIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_RHOP5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 59/163 (36.20%), Postives = 83/163 (50.92%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R +T  VMVG VA+G   PI VQ+MT  DT D+ GT+++V R++  G+++VRITV     A A   I++ L ++    PL+ D H+     L      AE  DK R+NPGN   +  +  Q                  F+ +VE   K  +AVR G N GSL
Sbjct:   18 RHRTTQVMVGQVAVGGGAPIVVQSMTNTDTADIQGTIDQVARLSQAGSEMVRITVDRDEAAAAVPHIRDGLRKRGITTPLIGDFHYIGHKLLADYPACAEALDKYRINPGNVGFKNKRDTQ------------------FTDIVEIALKNDKAVRIGANWGSL 162          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_PSEPF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            RR++R + VGNV +G + PI VQ+MT +DT DVA TV ++ R+   G D+VR++V     A+A  +IK  +      +PLVADIHF   +ALRVAE   D +R+NPGN                         E+    +V+  +  G  +R G N GSL
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNSDTNDVAATVAQINRLEAAGVDIVRVSVPDMDAAEAFGKIKQLV-----KVPLVADIHFDYKIALRVAELGVDCLRINPGNIGR----------------------EDRVRAVVDAARDRGIPIRIGVNAGSL 141          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_METCA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Methylococcus capsulatus GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 62/163 (38.04%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R++T  V VG+V IG   PI VQ+MT  DT DVAGTV +V+ +A  G++LVRITV  +  A+A   I+  L ++  N+PLV D HF     L      AE   K R+NPGN      +  Q                  F+ ++E   +Y + VR G N GSL
Sbjct:    4 RKQTVGVRVGSVRIGGGAPIVVQSMTNTDTADVAGTVRQVIDLARAGSELVRITVNNEEAAEAVPRIREELDRQGCNVPLVGDFHFNGHKLLDKYPACAEALGKFRINPGNVGRGSKRDPQ------------------FAQMIEFACRYDKPVRIGVNWGSL 148          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_CAMJJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R KTR + VGNV IG + PI VQ+M    T+D+ G++E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF  ++A+  AE  D +R+NPGN   +                  E+I+EV    V+ CK+ G  +R G NHGS+
Sbjct:    5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGNIGSK------------------ENIKEV----VKACKERGIPIRIGVNHGSI 136          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_CAMJE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter jejuni GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            R KTR + VGNV IG + PI VQ+M    T+D+ G++E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF  ++A+  AE  D +R+NPGN   +                  E+I+EV    V+ CK+ G  +R G NHGS+
Sbjct:    5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGNIGSK------------------ENIKEV----VKACKERGIPIRIGVNHGSI 136          
BLAST of DY258567 vs. ExPASy Swiss-Prot
Match: ISPG_BACSK (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 66/167 (39.52%), Postives = 84/167 (50.30%), Query Frame = 1
Query:  301 ESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCKKYGRAVRNGTNHGSL 798
            E +H   R+ TR V VGN+ IG    I +Q+MTT  T DV  TV E+ R+ + G  +VR+     R A+A  EIK     K  NIPLV DIHF    AL+  E   DKIR+NPGN   R                  E++E V    V+  K+ G  +R G N GSL
Sbjct:    3 ERVH---RKNTRPVKVGNLTIGGNDEIIIQSMTTTKTHDVEATVAEINRLEEAGCQIVRVACPDMRAAEAISEIK-----KRINIPLVVDIHFNYKFALKAIEGGADKIRINPGNIGKR------------------ENVEAV----VKAAKEKGIPIRIGVNAGSL 139          
The following BLAST results are available for this feature:
BLAST of DY258567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
ISPG_BACAC3.092e-1939.514-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACAA3.092e-1939.514-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GEOTN4.038e-1940.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SACD25.274e-1938.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHOP56.888e-1936.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEPF6.888e-1937.504-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_METCA6.888e-1938.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMJJ6.888e-1936.484-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMJE6.888e-1936.484-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACSK6.888e-1939.524-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258567 ID=DY258567; Name=DY258567; organism=Citrus clementina; type=EST; length=1244bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAAGTACGGAAGGGCAGTGCGTAATGGGACTAACCATGGGAGCCTTTC
GATCGTATCATGAACTAACATGGGGATTCTCCTAGGGGAATGGGTTAATC
TGGCTTTTAATTTGCAAAAATCCGCCGAAAATTGACTTCCTTAATTTTGT
CTTTTCAATGAAAACCAACAAACCCAGTCGTAATGGTCCAAGCAAACCGT
CCGGTGTAACCGAAAGGTAAGTTTCTGGGTTGGAATTACCCTTTCACTTT
GGGAATGACCAACCCCGGGAAAGGGGAAAAAGGGTCCGAAAAAAACCTCC
CATTGGAAATTGGTACCCCTTCTTCAGAGTTGGTTTTGGGGTAAAAAACT
CAGGGGGTTTCCCTTTTAAGCACCCCCCCCAAAAAAAAAAGAAAATGTCC
CCCCTTTTTAAAAAAAGGGGTTCCGCCCCACCCCCTTGTTGAATAAAAAA
AAAACACACCTGCTTTAATTTCCTTCCTCCCACAAAAAAGGAAG
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