DY258611
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_PYRFU (Replication factor C small subunit OS=Pyrococcus furiosus GN=rfcS PE=1 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 5.315e-52 Identity = 102/262 (38.93%), Postives = 174/262 (66.41%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794 LA+AR+L+G + + LELN+SD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +RL+++ E EGL++TE GL A++ + GDMR+A+NILQ+ ++IT+E V++ P+DI ++ L +F + +++ E+ +++GL+ D++ ++ VF + + +V L + + + +RL G N+ +QLE++++ FT Sbjct: 589 LALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFT 847
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_HALSA (Replication factor C small subunit OS=Halobacterium salinarium GN=rfcS PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 6.497e-50 Identity = 106/260 (40.77%), Postives = 166/260 (63.85%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIST 788 +++A++LYG + + LELN+SD+RGIDVVR +I+DFA + SFG + +++ LDEADA+T DAQ ALRR +E+++ NTRF L CN +KII +QSRC FRFA L V L+ + E EGL+ T+ G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L FA + + ++ +GLA DI+ +V V++ + VRL++ L + +YR++ G N+++QLE+++++ Sbjct: 61 VSIAKELYGDDWQDNFLELNASDERGIDVVRDRIKDFARS---SFGGH-NYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQLEALLAS 316
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_HALS3 (Replication factor C small subunit OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 6.497e-50 Identity = 106/260 (40.77%), Postives = 166/260 (63.85%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIST 788 +++A++LYG + + LELN+SD+RGIDVVR +I+DFA + SFG + +++ LDEADA+T DAQ ALRR +E+++ NTRF L CN +KII +QSRC FRFA L V L+ + E EGL+ T+ G+ ALV +GDMR+A+N LQ+ + EE VY T P++IE + L FA + + ++ +GLA DI+ +V V++ + VRL++ L + +YR++ G N+++QLE+++++ Sbjct: 61 VSIAKELYGDDWQDNFLELNASDERGIDVVRDRIKDFARS---SFGGH-NYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQLEALLAS 316
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METMP (Replication factor C small subunit OS=Methanococcus maripaludis GN=rfcS PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 3.225e-49 Identity = 101/259 (39.00%), Postives = 165/259 (63.71%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+A+ LYG + LELNSSD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ ALRR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L++ +GG+ A++ + GDMRKA+N+LQ+ S +ITEE VY P +I++++ LN F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+++QL ++++ Sbjct: 54 LALAKDLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METM7 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 4.211e-49 Identity = 100/259 (38.61%), Postives = 163/259 (62.93%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+A+ LYG + LELNSSD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ ALRR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L + +GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN F +S +++ + + G++ DI+ ++ V + + +V L+ + + ++R+ G N+++QL ++++ Sbjct: 54 LALAKDLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFVESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_HALMA (Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 7.183e-49 Identity = 102/262 (38.93%), Postives = 164/262 (62.60%), Query Frame = 3 Query: 12 AVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQ 797 A+AR+LYG + LELN+SD+RGIDVVR +I++FA T SFG +++ LDEADA+T DAQ ALRR +E+++ N RF L CN ++II +QSRC FRF+PL V E ++ + E +++TE GL ALV +GDMRKA+N LQ+ ++ + E AVY T P++I + L+ F S + + +G+A DI+ ++ +++ + D VR++ + + +YR++ G N+++QLE+++++ Q Sbjct: 66 AIARELYGDDWREHFLELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERVQLEAMLASLAQ 323
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METM5 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 9.382e-49 Identity = 100/259 (38.61%), Postives = 164/259 (63.32%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+A+ LYG + LELNSSD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ ALRR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L + +GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I+++++ LN F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+++QL ++++ Sbjct: 54 LALAKDLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFVEAKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METM6 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 2.730e-48 Identity = 100/259 (38.61%), Postives = 163/259 (62.93%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+A+ LYG + LELNSSD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ ALRR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + E LK + E E L + +GG+ A++ + GDMRKA+N+LQ+ S +TEE VY P +I++++ LN F ++ +++ + + G++ DI+ +V V + + +V L+ + + ++R+ G N+++QL ++++ Sbjct: 54 LALAKDLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_HALWD (Replication factor C small subunit OS=Haloquadratum walsbyi (strain DSM 16790) GN=rfcS PE=3 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 7.942e-48 Identity = 99/264 (37.50%), Postives = 163/264 (61.74%), Query Frame = 3 Query: 12 AVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQAR 803 A+A +YG + N +LELN+SD+RGIDVVR +I++FA + SFG +++ LDEAD++T DAQ ALRR +E++ NTRF L CN +KII +QSRC FRF+PL + + K + AE +++TE GL ALV GDMR+A+N LQ+ + + EE VY T P+DIE + ++ F + ++ + + G+A DI+ ++ + + + + VRL+ + + +YR++ G N+++QLE+++++ + Sbjct: 390 AIAHAVYGDDWQNNLLELNASDERGIDVVRDRIKNFARS---SFG-GYDHRIIFLDEADSLTDDAQSALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEETVYTITSTARPEDIETMVTAAIDGDFTTARSQLQTLLVDTGMAGGDIIDQLHRTAWNLDLDEETTVRLLERVGEADYRITVGANEQVQLEALLASLADTQ 649
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_STAMF (Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.355e-47 Identity = 107/261 (41.00%), Postives = 169/261 (64.75%), Query Frame = 3 Query: 15 VARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASV--KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFK--IKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 +A L+G Y +LELN+SD+RGIDV+R ++++FA T+ V A++ K+VLLDEAD MT DAQ ALRR++E YT TRF LI N +KII +QSRC FRFAPL+ V RLK + E E +++ E L A+ L GDMR+A+NILQ+ A ++T ++VY G P++I Q+ L +F D+ +++ E+ + GL+ VD++++V +F IK+P + ++ + + +I++RL G +D++QL + ++ Sbjct: 64 LAHDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTR-----VAANIPFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIRQMIQLALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADDEIQLNAFLA 318 The following BLAST results are available for this feature:
BLAST of DY258611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258611 ID=DY258611; Name=DY258611; organism=Citrus clementina; type=EST; length=1111bpback to top |