DY258611
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 5.148e-47 Identity = 93/261 (35.63%), Postives = 163/261 (62.45%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 T +A+AR L+G + + +E+N+SD+RGIDVVR +I++FA T A K++ LDEADA+T DAQ ALRR +E Y+K+ RF L CN V++II +QSRC FRF P+ + +RL + E EG+ +TE GL AL+ + GD RKA+N LQ + + + +Y T P+++ ++ L +F ++ + + + + G++ DIV ++ + + + ++V+L++ L ++++RL+ G N+++QL++ ++ Sbjct: 54 TAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_SULTO (Replication factor C small subunit OS=Sulfolobus tokodaii GN=rfcS PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.147e-46 Identity = 103/261 (39.46%), Postives = 165/261 (63.22%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF--KIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+ LYG Y LELN+SD+RGIDV+R ++++FA T + G K+VLLDEAD MT DAQ ALRR +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL ++ + E ++ + L + + GDMRKA+NILQ++ + ++T EAVY G PK+I ++ L +F + +++ E+ + GL+ DI++++ V +I +P D++V L++ + ++EYR+ G +D++QL ++++ Sbjct: 58 LALVHDLYGDNYRQYFLELNASDERGIDVIRNKVKEFARTVA---GGNVPFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYG-KVTVEAVYKVLGLAQPKEIREMIMLALQGNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDEIQLNALLA 314
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METVS (Replication factor C small subunit OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.147e-46 Identity = 94/259 (36.29%), Postives = 163/259 (62.93%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 L +A+ LYG + LELNSSD+RGIDV+R +++DFA T+ A K++ LDE+DA+T DAQ ALRR +EKY+ RF L CN +KIIP +QSRC FRF+PL+ + + LK + E E ++V + G+ A++ + GDMRKA+N+LQ+ S+ I E +Y P +I++++ LN F ++ +++ ++ + G++ DI+ ++ V +++ +V L+ + + ++R+ G N+++QL ++++ Sbjct: 54 LCLAKDLYGNTWKENFLELNSSDERGIDVIRTKVKDFARTKPIG---DAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERIQLSALLA 309
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3) HSP 1 Score: 186.037 bits (471), Expect = 3.337e-46 Identity = 101/263 (38.40%), Postives = 163/263 (61.98%), Query Frame = 3 Query: 12 AVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794 A+A L+G Y +LELN+SD+RGI+V+R+++++FA +++ + K+VLLDEAD MT DAQ ALRR++E Y+ TRF LI N +KII +QSRC FRF PL V ERL+++ E EG+D E L A+ + GDMRKA+N+LQ+ ++T +AVY G P+++ ++ L F + + ++ + G++ D+ R++ +F ++KMP ++RV + L ++ YRL G +D +QL + ++ T Sbjct: 59 ALAHDLFGENYRQYMLELNASDERGINVIREKVKEFARSRT---PPEIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLG-KVTVDAVYRVVGMAKPREVREMLATALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVEGSDDDIQLSAFLAWLT 317
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAR (Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.358e-46 Identity = 96/259 (37.07%), Postives = 161/259 (62.16%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 L +AR+LYG + LELN+SD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERL+H+ ++EG+++ + + + + GDMRKA+N+LQ S+ + AV T P D+ ++ N + +++ E+ KG+A +D +R + ++ + +V+ + LA+++YRL+ G +++LQL ++S Sbjct: 55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRPADVVELFNLAFNGDVTKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQGSDEELQLLYLLS 310
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METST (Replication factor C small subunit OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rfcS PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 5.692e-46 Identity = 100/265 (37.74%), Postives = 159/265 (60.00%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791 LA+A+ L G + LELN+SD RGID VR +I+ F ++ V A +++ LDE D MTKDAQ ALRR +E YTK + F L CN +KII +QSRC FRF+P++ ++ +RLK++ EG++ + L +V GDMRK++NILQ++ +TEEAVY PKD+ +I LN F ++ + ++ + +G++ D++ +EV + +P ++LM +++ +YR+ G N +LQLE+++S F Sbjct: 54 LALAKSLLGEYWQQNFLELNASDARGIDTVRNEIKSFCKLKA----VGAPFRIIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFMEARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGSNPRLQLEALLSKF 314
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_NATPD (Replication factor C small subunit OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 7.434e-46 Identity = 98/262 (37.40%), Postives = 164/262 (62.60%), Query Frame = 3 Query: 12 AVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQ 797 A+A+++YG + LELN+SD RGIDVVR +I+ FA SFG +++ LDEADA+T DAQ ALRR +E+++ NTRF L CN ++II +QSRC FRF+PL V E+++ + + EG+++T+ G+ ALV +GDMRKA+N LQ+ + + EEAVY T P++I ++ ++ F + ++ + G+A DI+ ++ V++ + V+LM + + +YR++ G +++LQLE++++ + Sbjct: 64 AIAKEVYGDDWRENFLELNASDQRGIDVVRDRIKSFARA---SFG-GYDHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDFTAARSQLETLLTDVGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEADYRITAGASEQLQLEALLAALAR 321
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METMJ (Replication factor C small subunit OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 9.709e-46 Identity = 97/264 (36.74%), Postives = 162/264 (61.36%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQA 800 +A+AR+ +G + E+N+SD+RGIDVVR QI++FA T + A+ K++ LDEADA+T DAQ ALRR +E Y + RF L CN +KII +QSRC +RF PL+ V E + + AEGL VTEG L A+V + +GDMRKA+N LQ + I EE ++ T P++I+++ + F ++ + + E+ +G+A +++ + + + + ++V+L++ L + ++RLS G + +Q+E++++ F A Sbjct: 57 VALAREFFGDSWQTNFREMNASDERGIDVVRNQIKEFARTSPLA---GATFKILFLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDELLDLSIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSDIQMEALLARFVLA 317
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRIL (Replication factor C small subunit 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 9.709e-46 Identity = 100/272 (36.76%), Postives = 163/272 (59.93%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAAA 824 L +AR+LYG + LELN+SD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERLK++ ++EG++V E + + L GDMRKA+NILQ ++ + V P DI ++ L+ + + +++ E+ KG+A VD +R + ++ + + + + LAD++YRL+ G ++++QL ++ I AA+ Sbjct: 55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVELFNLALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEIQLSYFLAKLGSIGKKIRAAS 323
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METS3 (Replication factor C small subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 2.163e-45 Identity = 98/267 (36.70%), Postives = 157/267 (58.80%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIV----REVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791 T +A+ + + G + LELN+SD RGID VR I++F + V A +++ LDE D MTKDAQ ALRR +E YTK F L CN +KII +QSRC FRF P++ + RLK++ +E + T+GG+ A+ GDMRKA+N+LQ+ +Q+ E+AVY P+D+ + L+ F + + E + +G + D+V ++V+ VF+ KM +D+ + L+ +AD ++R+ G N ++QLE++++ F Sbjct: 52 TAIALVKAILGEYWRQNFLELNASDARGIDTVRNDIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFMGARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGANPRIQLEALLTQF 314 The following BLAST results are available for this feature:
BLAST of DY258611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258611 ID=DY258611; Name=DY258611; organism=Citrus clementina; type=EST; length=1111bpback to top |