DY258622

Overview
NameDY258622
Unique NameDY258622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1295
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_ANASP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.585e-24
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T+ V VGNV IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EIK  L++   ++P+VAD+H     +AL VA   +K+R+NPG +   +      EYT  ++++  E I E  +PLV       KA+RIG N G+
Sbjct:   25 RRKTRPVKVGNVTIGGGYPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTVPSIAHAVALAEIKQKLIKTYQDVPIVADVHHNGMKIALEVAKHIEKVRINPGLYVFEKPNTNRTEYTQAEFEEIGEKIRETLAPLVITLRDQGKAMRIGVNHGS 183          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_ANAVT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.410e-24
Identity = 61/159 (38.36%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T+ V VGNV IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EIK  L+    ++P+VAD+H     +AL VA   +K+R+NPG +   +      EYT  ++++  E I E  +PLV       KA+RIG N G+
Sbjct:   25 RRKTRPVKVGNVTIGGGYPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTVPSIAHAVALAEIKQKLITTYQDVPIVADVHHNGMKIALEVAKHIEKVRINPGLYVFEKPNTNRTEYTQAEFEEIGEKIRETLAPLVITLRDQGKAMRIGVNHGS 183          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.760e-24
Identity = 61/159 (38.36%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T+ V VGNV IGS++P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A +  +IK  L +    +P+VAD+H     +AL VA   DK+R+NPG +   +A      YT+ ++    E I E   PLV       KA+RIG N G+
Sbjct:   21 RRKTRAVKVGNVTIGSDYPVVVQSMINEDTLDIEGSVAAIRRLHEIGCEIVRVTVPSMAHARSLAQIKAKLAETYQAVPIVADVHHNGMKIALEVAKHVDKVRINPGLYVFEQASGDRTGYTEAEFAAIGEKIRETLEPLVVSLRDQGKAMRIGVNHGS 179          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.523e-24
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T++VMVGN+ IGS++P+ VQ+M   DT D+  +   + R+ + G ++VR+TV     A A  EIK  L Q    +PLVAD+H     +AL VA   DK+R+NPG F          E+++ +     E I   F P+V       KA+RIG N G+
Sbjct:   24 RRKTRSVMVGNIGIGSDYPVAVQSMINEDTLDIEASTSAIRRLHEIGCEIVRLTVPSLSHAKAVGEIKRRLEQNYLPVPLVADVHHNGMKIALEVAKHVDKVRINPGLFVFSNPDPSRTEFSNSEISAIKEKIINNFEPIVNTLKAQNKALRIGVNHGS 182          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_ACAM1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.523e-24
Identity = 60/159 (37.74%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T+ V VG+V IG  HP+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A   IK  L      +PLVAD+H     +AL VA   DK+R+NPG +   +A+    E++  +++   + I E   PLV       KA+RIG N G+
Sbjct:   24 RRKTRPVPVGDVIIGGGHPVVVQSMINEDTLDIEGSVAAIRRLHELGCEIVRVTVPSMAHAKALATIKEKLTATYQTVPLVADVHHNGMKIALEVAKHVDKVRINPGLYVFEKAKDDRTEFSQSEFENIGDKIRETLEPLVVSLRDQNKAMRIGVNHGS 182          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_TRIEI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.825e-24
Identity = 64/184 (34.78%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  247 LQPASKRSPLLIPRQKYCESIHKTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +Q  +  S   I +  +  +IH   RR T++V VG++ IG  HP+ VQ+M   DT D+  +V  + R+ + G ++VR+TV     A +  EIK  L +    +PLVAD+H     +AL VA   DK+R+NPG +   + Q +  EYT  ++++  + I +   PLV       KA+RIG N G+
Sbjct:    1 MQTLANPSKTPINQAVFDTTIH---RRKTRSVKVGDITIGGGHPVVVQSMINEDTLDIERSVAAIRRLHEIGCEIVRVTVPSIAHAKSLGEIKQKLAETYKPVPLVADVHHNGMKIALEVAKQVDKVRINPGLYVFEKPQAERNEYTQAEFEEIGDKIRQTLKPLVVSLRDQNKAMRIGVNHGS 181          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_NOSP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.825e-24
Identity = 58/159 (36.48%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T+ V VGNV IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EIK  L++   ++P+VAD+H     +AL V+   +K+R+NPG +   +      EYT  ++ +  + I E   PLV       K++RIG N G+
Sbjct:   25 RRKTRPVKVGNVTIGGGYPVVVQSMINEDTLDIDGSVAGIRRLHEIGCEIVRVTVPSMAHAKALAEIKQKLIKTYQDVPIVADVHHNGLKIALEVSKHIEKVRINPGLYVFEKPNVNRTEYTQSEFDEIGDKIRETLEPLVVSLRDQGKSMRIGVNHGS 183          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.283e-23
Identity = 65/184 (35.33%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  247 LQPASKRSPLLIPRQKYCESIHKTVRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +Q      PL     ++  +IH   RR T+ V VG++ IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EI   L +    +PLVAD+H     +AL VA   DK+R+NPG +   +      EYT  ++ +  E I E   PLV       KA+RIG N G+
Sbjct:    1 MQTLETPKPLTNTSPEFDTTIH---RRQTRPVKVGDITIGGGYPVVVQSMINEDTLDIEGSVAGIRRLHEIGCEIVRVTVPSMAHAKALAEINQKLAEVYRRVPLVADVHHNGLKIALEVAKHVDKVRINPGLYVFEKPSTTRSEYTQAEFDEIGEKISETLKPLVVSLRDQGKAMRIGVNHGS 181          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP6 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.859e-23
Identity = 59/159 (37.11%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T++V VG++ IGS HP+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  +IK  L     ++PLVAD+H     +AL VA   DK+R+NPG +   +       YT +++++  + I +   PLV    +  KA+RIG N G+
Sbjct:   20 RRPTRSVRVGDIWIGSRHPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTVPSLGHAKAVGDIKKKLQDTYRDVPLVADVHHNGMKIALEVAKHVDKVRINPGLYVFEKPDPNRQGYTPEEFERIGKQIRDTLEPLVTSLREQDKAMRIGVNHGS 178          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_SYNE7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.859e-23
Identity = 59/159 (37.11%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            RR T++V VG++ IGS HP+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  +IK  L     ++PLVAD+H     +AL VA   DK+R+NPG +   +       YT +++++  + I +   PLV    +  KA+RIG N G+
Sbjct:   20 RRPTRSVRVGDIWIGSRHPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTVPSLGHAKAVGDIKKKLQDTYRDVPLVADVHHNGMKIALEVAKHVDKVRINPGLYVFEKPDPNRQGYTPEEFERIGKQIRDTLEPLVTSLREQDKAMRIGVNHGS 178          
The following BLAST results are available for this feature:
BLAST of DY258622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
ISPG_ANASP2.585e-2438.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANAVT4.410e-2438.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP25.760e-2438.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMA7.523e-2438.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACAM17.523e-2437.744-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_TRIEI9.825e-2434.784-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NOSP79.825e-2436.484-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP81.283e-2335.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP62.859e-2337.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNE72.859e-2337.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258622 ID=DY258622; Name=DY258622; organism=Citrus clementina; type=EST; length=1295bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAAAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAACACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCATCTAGAGTACACAGACGATGACTATCAAA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCCTTGGTTGAGAAATGC
TAAAAGTACAGAAAGGCAGTGCGTATTGGGACTAACCCTGGGAACCCTTT
CAAATCCTATCATGAGCTTCAATGGGGAATCTCCTCGGGGAATGGTTTGA
ATCTGCCTTTTAATTTGCAAAAATCTGGCTGTAAATTGGAACTTCCATAT
TTTTGTCTTTTCCATGAAAGCCAAGGCACCCAGCTCGAAATGGGTCAAAG
CAACCCCCTTTGCTGGAGTTTGAAATGGTAGTGCTCCTGGTTGGAAATTA
CCCATTATCATTTGGGAGAATGACTGGAAGCTTGGAAAAAGGGAAAAAAT
AGGCCGGATATAATATCTCTTGTTATTGGGAATTTGGGATCCCTCTCCTC
CTGAAGAGGGGTGTTTGGGGTGATACAAAAATTCAGGGGTTTTCCCCTTT
TTAAGGAACACCCCTCCAAAAAAAAAGGGAGAAAATATTTAACCCTCTTT
GTCGAAAAGGGGGGTGTGTCCCCCCAAACCCTGGTGGGGAATAATAAAAA
GAAAACAGCAGGGCTGCTAGACATTTTTTTTCCTTCCAGACGGAA
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