DY258622

Overview
NameDY258622
Unique NameDY258622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1295
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_PSEA8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.917e-19
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  304 SIHKT---VRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            SIH     +RR ++ + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    2 SIHSASPIIRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_THETH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermus thermophilus GN=ispG PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.271e-19
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  319 VRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +RR T TV VG V IG  HPI VQ+MT   T+DV  T  +V+ +   G+++VR+TV  +  A A  EIK  L+ +   +PLV D HF   + LR    +A+  DK R+NPG     R                  H +E F+ ++       K VRIG N G+
Sbjct:    4 MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGR------------------HKDEHFAEMIRIAMDLGKPVRIGANWGS 148          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_THET2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.271e-19
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  319 VRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +RR T TV VG V IG  HPI VQ+MT   T+DV  T  +V+ +   G+++VR+TV  +  A A  EIK  L+ +   +PLV D HF   + LR    +A+  DK R+NPG     R                  H +E F+ ++       K VRIG N G+
Sbjct:    4 MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGR------------------HKDEHFAEMIRIAMDLGKPVRIGANWGS 148          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_THET8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.272e-19
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  319 VRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            +RR T TV VG V IG  HPI VQ+MT   T+DV  T  +V+ +   G+++VR+TV  +  A A  EIK  L+ +   +PLV D HF   + LR    +A+  DK R+NPG     R                  H +E F+ ++       K VRIG N G+
Sbjct:    4 MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGAEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGR------------------HKDEHFAEMIRIAMDLGKPVRIGANWGS 148          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_RHOPB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.272e-19
Identity = 63/164 (38.41%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN--FADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGN 795
            R  T  VMVG+VA+G   PI VQ+MT  DT DVAGTVE+V  +   G++LVRITV  +  A A   I++ L ++    PL+ D H+     L      A+  DK R+NPGN  F ++R                    +  F+ +VE   K  KAVRIG N G+
Sbjct:   18 RHKTTQVMVGDVAVGGGAPIVVQSMTNTDTADVAGTVEQVAALTRAGSELVRITVDREEAAAAVPHIRDALRKRGITTPLIGDFHYIGHKLLADYPACAEALDKYRINPGNVGFKNKR--------------------DSQFADIVEIAIKNNKAVRIGANWGS 161          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_PSEE4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.272e-19
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RR ++ + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK     K  ++PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRVSVPDMDAAEAFGKIK-----KLVSVPLVADIHFDYKIALRVAELGVDCLRINPGN 111          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_PSEA7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.272e-19
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  304 SIHKT---VRRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            SIH      RR ++ + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    2 SIHSASPITRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_NITSB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=ispG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.272e-19
Identity = 65/172 (37.79%), Postives = 93/172 (54.07%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFADRRAQFQHLEYTDDDYQKELEHIEEVFSPLVEKC*KYRKAVRIGTNPGNPFKSYHELQWGISS 837
            R  T+ + VG+VA+G + PI VQ+MT + T DV  TVE++ R+   GAD+VR+ V  + +A A  EIK     K  ++PLVADIHF   +AL  A+  D IR+NPGN   +                  E I+EV    V+ C +    +RIG N G+  K   E ++G +S
Sbjct:    3 RYPTKKIFVGDVAVGGDAPISVQSMTFSKTADVEATVEQINRLHFAGADIVRVAVPEEEDAKALKEIK-----KRTSLPLVADIHFNYRLALIAAEVVDCIRINPGNIGSK------------------ERIKEV----VKACKERNIPIRIGVNAGSLEKEI-EAKYGATS 146          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_PSEPK (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain KT2440) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.579e-19
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RR ++ + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK     +  ++PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRVSVPDMDAAEAFGKIK-----QRVSVPLVADIHFDYKIALRVAELGVDCLRINPGN 111          
BLAST of DY258622 vs. ExPASy Swiss-Prot
Match: ISPG_PSEPG (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain GB-1) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.579e-19
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  322 RRNTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RR ++ + VGNV +G + PI VQ+MT  DT DVA TV ++ R+ D G D+VR++V     A+A  +IK  +     ++PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    9 RRESRKIWVGNVPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRVSVPDMDAAEAFGKIKQLV-----SVPLVADIHFDYKIALRVAELGVDCLRINPGN 111          
The following BLAST results are available for this feature:
BLAST of DY258622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
ISPG_PSEA81.917e-1946.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THETH3.271e-1936.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THET23.271e-1936.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THET84.272e-1936.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHOPB4.272e-1938.414-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEE44.272e-1947.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEA74.272e-1946.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NITSB4.272e-1937.794-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEPK5.579e-1946.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEPG5.579e-1946.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258622 ID=DY258622; Name=DY258622; organism=Citrus clementina; type=EST; length=1295bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAAAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAACACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCATCTAGAGTACACAGACGATGACTATCAAA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCCTTGGTTGAGAAATGC
TAAAAGTACAGAAAGGCAGTGCGTATTGGGACTAACCCTGGGAACCCTTT
CAAATCCTATCATGAGCTTCAATGGGGAATCTCCTCGGGGAATGGTTTGA
ATCTGCCTTTTAATTTGCAAAAATCTGGCTGTAAATTGGAACTTCCATAT
TTTTGTCTTTTCCATGAAAGCCAAGGCACCCAGCTCGAAATGGGTCAAAG
CAACCCCCTTTGCTGGAGTTTGAAATGGTAGTGCTCCTGGTTGGAAATTA
CCCATTATCATTTGGGAGAATGACTGGAAGCTTGGAAAAAGGGAAAAAAT
AGGCCGGATATAATATCTCTTGTTATTGGGAATTTGGGATCCCTCTCCTC
CTGAAGAGGGGTGTTTGGGGTGATACAAAAATTCAGGGGTTTTCCCCTTT
TTAAGGAACACCCCTCCAAAAAAAAAGGGAGAAAATATTTAACCCTCTTT
GTCGAAAAGGGGGGTGTGTCCCCCCAAACCCTGGTGGGGAATAATAAAAA
GAAAACAGCAGGGCTGCTAGACATTTTTTTTCCTTCCAGACGGAA
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