DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.393e-30
Identity = 59/151 (39.07%), Postives = 105/151 (69.54%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            +K+V +GD  VGK+++++RF  ++F    ++TIG++F ++++ ++D+ V+ Q+WDTAGQER+R++  +Y R +  A++VYDV    +F N  +W+ E+R    S+++++LVGNK DL   R VS E+A++ A + N  F+ETSA    N++
Sbjct:   10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 134.42 bits (337), Expect = 1.393e-30
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDK----------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTLPKG 803
            D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +           V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +    N  I+L+GNKADL   R V+   A+  A+K    + ETSA    NVE A+  +L  I + +  + +E    P T+  G
Sbjct:    3 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM-EQCVEKTQIPDTVNGG 201          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RASEF_DANRE (RAS and EF-hand domain-containing protein OS=Danio rerio GN=rasef PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.393e-30
Identity = 69/170 (40.59%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR----AVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVV 752
            ++++VL GD+G GKS+ L R + NEF  + ++T+GV+F  + + VD +    QIWDTAGQER+R+I  +Y+R A G LL+YDVT   +F NV  W++++R+ TD +I + ++GNK DLR  R     VS+   +  A   N  F E SA E  NV  A+  +  ++ + V
Sbjct:  467 VYRLVLAGDAGSGKSSFLLRLSLNEFRGDIQTTLGVDFQIKKMLVDGEKTNLQIWDTAGQERFRSIARSYFRKAHGVLLLYDVTSESSFLNVREWVEQIRESTDEDIPMCIIGNKVDLRAARPEGSCVSSIHGEKLAMNYNALFCEASAKEGTNVIEAVLHLAREVKKHV 636          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.819e-30
Identity = 60/171 (35.09%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENT-FFMETSALESLNVENALPEVLTQIYRVVNREA 764
            +K+V +G+ GVGK++L++RF  + F    ++TIG++F ++++ +DDK ++ Q+WDTAGQER+R++  +Y R +  A++VYD+T+  +FE +++W+++++ +  D N+++ +VGNK+DL   R +STE+ +  A+      FMETS     NV+    ++   +    N E+
Sbjct:   11 YKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSES 181          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RABJ_DICDI (Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.819e-30
Identity = 66/156 (42.31%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEV 728
            KVVL+G S VGK+ L  R+    F     STIG  F TR+I ++   +K  IWD+AGQ+R+R++ + YYRGA  A+LV+D+T+  TF+ V+ W++EL+ +    I+++L GNK DL   R V +E A+ +A++ N  ++ETSA E+  VE    E+
Sbjct:   11 KVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKLYADEINAMYVETSAKENEGVEGMFLEI 166          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.819e-30
Identity = 73/200 (36.50%), Postives = 114/200 (57.00%), Query Frame = 3
Query:  231 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTLPKGQIIILVQK 827
            RA      +FK+VL+G   VGKS+L  R+ KN+F      T+G  F T+ + V    +K +IWDTAGQE+Y ++   Y+RGA  ALLVYD+TR  +F   ++WLK+L +      +++MLVGNK DL   R V+ ++ + FA+ +   FMETSA         L   +++++  V +E L+  D+     +G   + + K
Sbjct:   11 RAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFK-SILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSA--------KLNHQVSEVFNTVAQELLQRSDEEGQALRGDAAVALNK 201          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.376e-30
Identity = 69/164 (42.07%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENALPEVL 731
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + VDD++V  QIWDTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK DL + R V+T+ AQ++   K N  + ETSA E++NVE A   ++
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIV 170          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.103e-30
Identity = 71/186 (38.17%), Postives = 114/186 (61.29%), Query Frame = 3
Query:  234 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRV-----DDKV-----VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNR 758
            +D DYDYL K + +GDSGVGK+++L ++T  +F+ +  +T+G++F  + +       D  +     +  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ H    N  I+L GNK+DL   R V  E+A+  AEK    + ETSA    NV  A+  +L  I + + R
Sbjct:    2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEEARGLAEKYGIPYFETSAANGTNVSLAIETLLDLIMKRMER 187          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.103e-30
Identity = 69/163 (42.33%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENALPEV 728
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + VDD++V  QIWDTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK DL + R V+T+ AQ++   K N  + ETSA E++NVE A   +
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.103e-30
Identity = 69/163 (42.33%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENALPEV 728
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + VDD++V  QIWDTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK DL + R V+T+ AQ++   K N  + ETSA E++NVE A   +
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBH1B_ARATH1.393e-3039.07Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RB27B_HUMAN1.393e-3037.50Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RASEF_DANRE1.393e-3040.59RAS and EF-hand domain-containing protein OS=Danio... [more]
YPT6_YEAST1.819e-3035.09GTP-binding protein YPT6 OS=Saccharomyces cerevisi... [more]
RABJ_DICDI1.819e-3042.31Ras-related protein RabJ OS=Dictyostelium discoide... [more]
RAB17_HUMAN1.819e-3036.50Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RAB7A_BOVIN2.376e-3042.07Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RB27A_PIG3.103e-3038.17Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RAB7A_RAT3.103e-3042.33Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB3.103e-3042.33Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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