DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.103e-30
Identity = 69/163 (42.33%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENALPEV 728
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + VDD++V  QIWDTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK DL + R V+T+ AQ++   K N  + ETSA E++NVE A   +
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.103e-30
Identity = 69/163 (42.33%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENALPEV 728
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + VDD++V  QIWDTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK DL + R V+T+ AQ++   K N  + ETSA E++NVE A   +
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.103e-30
Identity = 69/163 (42.33%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENALPEV 728
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + VDD++V  QIWDTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK DL + R V+T+ AQ++   K N  + ETSA E++NVE A   +
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.052e-30
Identity = 59/152 (38.82%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V +GD  VGK+++++RF  ++F    + TIG++F ++++ ++D+ V+ Q+WDTAGQER+R++  +Y R +  A++VYDV+   TF N  +W++++ R+   SN++I+LVGNK DL   R VS  + +   ++    F+ETSA E+ N++
Sbjct:   10 FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIK 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.052e-30
Identity = 71/185 (38.38%), Postives = 111/185 (60.00%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTL 794
            LFK++L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + VD   V  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK D++  R VSTE+AQ++ +    + + ETSA +S NV  A  E + +I    +R    ++ D   L
Sbjct:    7 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSEHLIQTDTVNL 190          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.052e-30
Identity = 62/186 (33.33%), Postives = 117/186 (62.90%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNRE------ALEVRDDPPTLP 797
            FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++ ++D+ V+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   R ++ E+ +  A++ +  F+ETSA    NV+     V + +  + N +       ++++ D P  P
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEP 199          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.052e-30
Identity = 62/186 (33.33%), Postives = 117/186 (62.90%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNRE------ALEVRDDPPTLP 797
            FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++ ++D+ V+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   R ++ E+ +  A++ +  F+ETSA    NV+     V + +  + N +       ++++ D P  P
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEP 199          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.052e-30
Identity = 62/186 (33.33%), Postives = 117/186 (62.90%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNRE------ALEVRDDPPTLP 797
            FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++ ++D+ V+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   R ++ E+ +  A++ +  F+ETSA    NV+     V + +  + N +       ++++ D P  P
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEP 199          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 5.292e-30
Identity = 71/185 (38.38%), Postives = 111/185 (60.00%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTL 794
            LFK++L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + VD   V  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK D++  R VSTE+AQ++ +    + + ETSA +S NV  A  E + +I    +R    ++ D   L
Sbjct:    7 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSDHLIQTDTVNL 190          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 6.912e-30
Identity = 69/186 (37.10%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  234 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVD----------DKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNR 758
            +D DYDYL K + +GDSGVGK+++L ++T  +F+ +  +T+G++F  + +              + +  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ H    N  I+L GNK+DL   R V  E+A + AEK    + ETSA    N+  A+  +L  I + + R
Sbjct:    2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMER 187          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7A_MOUSE3.103e-3042.33Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN3.103e-3042.33Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA3.103e-3042.33Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RBH1C_ARATH4.052e-3038.82Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB9A_MOUSE4.052e-3038.38Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB6B_MOUSE4.052e-3033.33Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN4.052e-3033.33Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN4.052e-3033.33Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RAB9A_RAT5.292e-3038.38Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RB27A_HUMAN6.912e-3037.10Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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