DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RABZ_DICDI (Ras-related protein RabZ OS=Dictyostelium discoideum GN=rabZ PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 6.912e-30
Identity = 65/165 (39.39%), Postives = 106/165 (64.24%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESK-STIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            D ++ ++LIGD   GKS++L RF  N+F +  K S I ++  T+ I+++ K +  + +DTAGQE++RA++ +YYR A G +L YD+    TF+NV RWL+E+      N+ I+++ NK DL   R V+  +A+ FA+ +N   +E SA ESL VE A  ++ ++I
Sbjct:   48 DDVYTIILIGDQATGKSSVLQRFKNNQFEVCHKPSPIIIDCFTKKIQIEGKKISLKCYDTAGQEKFRALSQSYYRCADGIMLFYDIANQKTFDNVGRWLEEVHRLAGPNVPILIIANKCDLNEKRVVNFNNAKKFADDKNIPIIEVSAKESLGVEEAFIKLASEI 212          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RASEF_MOUSE (RAS and EF-hand domain-containing protein homolog OS=Mus musculus GN=Rasef PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 9.027e-30
Identity = 70/167 (41.92%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL------RAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            +K+VL GD+ VGKS+ L R  KNEF   + +T+GV+F  +++ VD +    Q+WDTAGQER+R+I  +Y+R A G LL+YDVT   +F NV  W+  + D T   I IMLVGNKADLR +      + +S    +  A      F ETSA +  NV  A+  +  ++
Sbjct:  429 YKIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLIVDGEQTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNVREWVDMVEDGTHRTIPIMLVGNKADLRDVDNAENQKCISAYLGEKLAMTYGALFCETSAKDGSNVVEAVLHLAREV 595          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.179e-29
Identity = 64/154 (41.56%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH---LRAVSTEDAQSFAEKENTFFMETSALESLNVEN 713
            K+VL+G++ VGKS+++ RF  N+F+   + TIG  F T+ + +++  VK +IWDTAGQER+ ++   YYR A  AL+VYDVT+  +F     W+KEL +    +I+I LVGNK D+      R V+ E+ +  AE++   F ETSA    NV +
Sbjct:    9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 162          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.179e-29
Identity = 67/161 (41.61%), Postives = 107/161 (66.46%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN----IVIMLVGNKADL--RHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENA 716
            L KV+++GDSGVGK++L++++  N+FS + K+TIG +F T+ +++DD++V  QIWDTAGQER++++  A+YRGA   +LVYDV    +FE+++ W  E               +L+GNK D+   + R VS + A+ + AEK N  + ETSA E  NV+++
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDS 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.179e-29
Identity = 71/178 (39.89%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  252 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDD 782
            Y+ K+VL+G S VGK++L  R+ K +FS     T+G  F T+ + +    +K +IWDTAGQE+Y+++   Y+RGA  ALLVYD+TR  +F   ++WL++L ++     +V+MLVGNK DL   R V+ ++ + FAE ++  FMETSA   LN +      +++I+  V +E L+   D
Sbjct:   18 YVSKLVLLGSSSVGKTSLALRYMKQDFS-NVLPTVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSA--KLNYQ------VSEIFNTVAQELLQRAGD 186          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.011e-29
Identity = 71/170 (41.76%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENALPEVLTQIYRV 749
            L KV+L+GD GVGKS+L++R+  N+F  ++  TIGVEF  R + VD + V  QIWDTAGQER++++ + +YRGA   LL + V    +FEN+  W KE   + D     +   +++GNK D +  R V+TE+AQ++  E  N  ++ETSA +  NV  A  E + Q+  V
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVD-KEDRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQVLAV 175          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.011e-29
Identity = 71/177 (40.11%), Postives = 110/177 (62.15%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADLRH-LRAVSTEDAQSFAE-KENTFFMETSALESLNVENALPEVLTQIYRVVNREAL 767
            L KV+++GDSGVGK++L++++   +FS   K+TIG +F TR + VDD+ V  Q+WDTAGQER++++  A+YRGA   +LVYDV    +F+ ++ W    L +       N   +++GNK D+    R +ST+ A +F + K N  + ETSA E++NVE        Q + V+ R AL
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVE--------QAFEVIARNAL 176          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB41_HUMAN (Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.011e-29
Identity = 60/176 (34.09%), Postives = 110/176 (62.50%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPP 788
            K++ +G+  VGK++++SRF  N F    ++T+G++F ++++ ++D++V+ Q+WDTAGQER+ ++  +Y R +  A++VYD+T   +F+  ++W++ +R     ++VIML+GNK DL + R V+ E  +  +   N  F+ETSA    NV+        +++R V    L  R  PP
Sbjct:   33 KLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVK--------KLFRRVASALLSTRTSPP 200          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.626e-29
Identity = 70/185 (37.84%), Postives = 110/185 (59.46%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTL 794
            LFKV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + VD   V  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK D+   R VSTE+AQ++      + + ETSA ++ NV  A  E + ++    +R    ++ D  +L
Sbjct:    7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVSL 190          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB21_RAT (Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.626e-29
Identity = 65/153 (42.48%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  252 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            Y FKVVL+G+  VGK++L+ R+ +N+F+ +  +T+   F T+ + +  K V   IWDTAGQER+ A+   YYR + GA+LVYDVT   +F+ V+ W+KELR    + I + +VGNK DL   R VS ++A+S+AE        TSA ++  +E
Sbjct:   16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 168          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABZ_DICDI6.912e-3039.39Ras-related protein RabZ OS=Dictyostelium discoide... [more]
RASEF_MOUSE9.027e-3041.92RAS and EF-hand domain-containing protein homolog ... [more]
VPS21_YEAST1.179e-2941.56Vacuolar protein sorting-associated protein 21 OS=... [more]
RAB7_ARATH1.179e-2941.61Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB17_MOUSE1.179e-2939.89Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]
RAB9B_MOUSE2.011e-2941.76Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB7_NEUCR2.011e-2940.11Probable Ras-related protein Rab7 OS=Neurospora cr... [more]
RAB41_HUMAN2.011e-2934.09Ras-related protein Rab-41 OS=Homo sapiens GN=RAB4... [more]
RAB9A_CANFA2.626e-2937.84Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB21_RAT2.626e-2942.48Ras-related protein Rab-21 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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