DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB21_MOUSE (Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4)

HSP 1 Score: 130.183 bits (326), Expect = 2.626e-29
Identity = 65/153 (42.48%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  252 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            Y FKVVL+G+  VGK++L+ R+ +N+F+ +  +T+   F T+ + +  K V   IWDTAGQER+ A+   YYR + GA+LVYDVT   +F+ V+ W+KELR    + I + +VGNK DL   R VS ++A+S+AE        TSA ++  +E
Sbjct:   16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB21_BOVIN (Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.626e-29
Identity = 64/153 (41.83%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  252 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            Y FKVVL+G+  VGK++L+ R+ +N+F+ +  +T+   F T+ + +  K V   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL   R VS ++A+S+AE        TSA ++  +E
Sbjct:   15 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 167          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.430e-29
Identity = 69/170 (40.59%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEVLTQIYRV 749
            L KV+L+GD GVGKS+L++R+  N+F  ++  TIGVEF  R + VD + V  QIWDTAGQER++++ + +YRGA   LL + V    +FEN+  W KE   + D     +   +++GNK D +  R V+TE+AQ++  +   + ++ETSA +  NV  A  E + Q+  V
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD-KEDRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.430e-29
Identity = 69/170 (40.59%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEVLTQIYRV 749
            L KV+L+GD GVGKS+L++R+  N+F  ++  TIGVEF  R + VD + V  QIWDTAGQER++++ + +YRGA   LL + V    +FEN+  W KE   + D     +   +++GNK D +  R V+TE+AQ++  +   + ++ETSA +  NV  A  E + Q+  V
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.430e-29
Identity = 70/185 (37.84%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTL 794
            LFKV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + VD   V  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK D+   R VSTE+AQ++      + + ETSA ++ NV  A  E + ++    +R    ++ D   L
Sbjct:    7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVNL 190          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB21_HUMAN (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 3.430e-29
Identity = 64/153 (41.83%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  252 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            Y FKVVL+G+  VGK++L+ R+ +N+F+ +  +T+   F T+ + +  K V   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL   R VS ++A+S+AE        TSA ++  +E
Sbjct:   18 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 170          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB21_CANFA (Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 3.430e-29
Identity = 64/153 (41.83%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  252 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            Y FKVVL+G+  VGK++L+ R+ +N+F+ +  +T+   F T+ + +  K V   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL   R VS ++A+S+AE        TSA ++  +E
Sbjct:   16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.851e-29
Identity = 72/199 (36.18%), Postives = 113/199 (56.78%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVD--------DKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADL--------------------RHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREAL 767
            FK+VL+GDS VGKS+++ RF K+ F    +STIG  F ++SI +         D V+K +IWDTAGQERY+++   YYR A  AL+VYD+T+  + +    W+ EL++   D ++VI L+GNK DL                    + +RA+STE+A+ +A+++   F E SA     V+    ++  ++Y +   E L
Sbjct:    4 FKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGEKLYDLKKDEIL 202          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.642e-29
Identity = 62/166 (37.35%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  273 IGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEK-ENTFFMETSALESLNVENALPEVLTQIYRVVNREAL 767
            IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K ++ QIWDTAGQER+ +ITSAYYR A G +LVYD+T+  TF+++ +W+K +  +   +  ++L GNK D    R +S +  + FA++       E SA ++ NV+    +++  I + +  + L
Sbjct:    1 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKLVDDILKKMPLDVL 166          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.303e-28
Identity = 73/182 (40.11%), Postives = 111/182 (60.99%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKADLR--HLRAVSTEDAQSF-AEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRD 779
            L KV+++GDSGVGK++L++++ + +F+ E K+TIG +F T+ I VDDK V  QIWDTAGQER++++ SA+YRGA   +LV+DV    +F++++ W  E           N   M++GNK D      R VS + A+++ A K +  + ETSA E +NVE A   +     R    E L + D
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFMPD 189          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB21_MOUSE2.626e-2942.48Ras-related protein Rab-21 OS=Mus musculus GN=Rab2... [more]
RAB21_BOVIN2.626e-2941.83Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 ... [more]
RAB9B_PONAB3.430e-2940.59Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_HUMAN3.430e-2940.59Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB9A_HUMAN3.430e-2937.84Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB21_HUMAN3.430e-2941.83Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2... [more]
RAB21_CANFA3.430e-2941.83Ras-related protein Rab-21 OS=Canis familiaris GN=... [more]
YPT52_YEAST5.851e-2936.18GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
RAB12_RAT7.642e-2937.35Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
YPTC5_CHLRE1.303e-2840.11GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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