DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.303e-28
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL------RHLRAVSTEDAQSFAEKENTFFMETSALESLNV 707
            KVVL+G+S VGKS+++ RF  ++F    + TIG  F T+ I  D KV+K +IWDTAGQER+  +   YYR A  AL+V+DVT   +F   + W++EL +    +IVI LVGNK DL         RA+     Q+  E+EN  + E SA    N+
Sbjct:   14 KVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENI 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB32A_DICDI (Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.702e-28
Identity = 70/171 (40.94%), Postives = 107/171 (62.57%), Query Frame = 3
Query:  234 ADDD--YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-----DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENA 716
            ADD+   +YL+K++++GD G GK++++ RF  N FS+  KSTIGV+FA + I  D K  V+ Q+WD AGQER+ ++T  YY+ AVGA++ +DVTR  TFE V +W  ++         +  I ++L+ NK DL     + T +      K+N F  + ETSA E++N+E A
Sbjct:    6 ADDEGYNEYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLANKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKA 176          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.702e-28
Identity = 68/182 (37.36%), Postives = 111/182 (60.99%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKADL--RHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRD 779
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ ++ +D++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N+  W +E           N   +++GNK D+   + R VS + A+++ A K N  + ETSA E +NVE A   +     +    E L + D
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPD 189          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.702e-28
Identity = 70/182 (38.46%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKADL--RHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRD 779
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ ++ +D++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N+  W +E           N   +L+GNK D+   + R VS + A+++ A K N  + ETSA E  NVE+A   ++    +    E L V D
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNEPEEELYVPD 189          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.904e-28
Identity = 68/165 (41.21%), Postives = 106/165 (64.24%), Query Frame = 3
Query:  252 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSN---IVIMLVGNKADL-RHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEV 728
            +L KV+++G+SGVGK+++++++   +FS + K+TIG +F T+ + VDDKVV  Q+WDTAGQER++++  A+YRGA   +LVYDV    +FE ++ W  E L   + SN      +L+GNK D+    R VS   A +F +      + ETSA E++NV+ A   V
Sbjct:    7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETV 171          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RASEF_HUMAN (RAS and EF-hand domain-containing protein OS=Homo sapiens GN=RASEF PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.904e-28
Identity = 65/174 (37.36%), Postives = 100/174 (57.47%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTED------AQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNRE 761
            +K+VL GD+ VGKS+ L R  KNEF     +T+GV+F  +++ VD +    Q+WDTAGQER+R+I  +Y+R A G LL+YDVT   +F N+  W+  + D     + IMLVGNKAD+R   A   +        +  A      F ETSA +  N+  A+  +  ++ +  +++
Sbjct:  542 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRTDKD 715          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB33_CAEEL (Ras-related protein Rab-33 OS=Caenorhabditis elegans GN=rab-33 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.953e-28
Identity = 67/187 (35.83%), Postives = 110/187 (58.82%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH---TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTLPKGQ 806
            FKV+++G++ VGK+ L  RF    F   +++TIGV+F  RS  +++++++ Q+WDTAGQERYR +I + YYR     + VYDVT   +F ++  W+KE   H    DS +  +L+GNK D+     VST++AQ FA++ N    ETSA  +   ++     LT ++++   + + V+       K Q
Sbjct:  101 FKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENELLRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKECEKHGLVGDSEVPRILIGNKCDVECTNRVSTDEAQMFADRNNMALFETSAKLASEADHVESIFLTLLHKLQQSKPMHVQSQDERHQKEQ 287          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.469e-28
Identity = 70/181 (38.67%), Postives = 112/181 (61.88%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKAD-LRHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRD 779
            + K++++GDSGVGK++L++++ + +F+ E K+TIG +F T+ I VDDK V  QIWDTAGQER++++ SA+YRGA   +LV+DV    +F++++ W  E           N   +++GNK D +   R V+ + A+++ A K +  + ETSA E +NVE A   +     R    E L V D
Sbjct:    8 VLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGNKIDEVGVNRQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFVPD 188          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.103e-27
Identity = 67/161 (41.61%), Postives = 105/161 (65.22%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADL--RHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENA 716
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +++DD++V  QIWDTAGQER++++  A+YRGA   +LVYDV    +F+ +E W    LK+           +L+GNK D+   + R VS + A+ + A K N  + ETSA E  NV+ A
Sbjct:    8 LLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAA 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.882e-27
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVD-DKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN----IVIMLVGNKADLRH-LRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEV 728
            + KV+++GDSGVGK++L+ R+  +++S + K+TIG +F T+ + VD DKV   Q+WDTAGQER++++  A+YRGA   +LVYDVT   +FEN++ W  E   H + N       +++GNK D     + VS + AQ  A+         TSA  ++NV+ A  E+
Sbjct:    8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT53_YEAST1.303e-2842.58GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]
RB32A_DICDI1.702e-2840.94Ras-related protein Rab-32A OS=Dictyostelium disco... [more]
RAB7_PEA1.702e-2837.36Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB7_CENCI1.702e-2838.46Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
YPT7_SCHPO2.904e-2841.21GTP-binding protein ypt7 OS=Schizosaccharomyces po... [more]
RASEF_HUMAN2.904e-2837.36RAS and EF-hand domain-containing protein OS=Homo ... [more]
RAB33_CAEEL4.953e-2835.83Ras-related protein Rab-33 OS=Caenorhabditis elega... [more]
YPTV5_VOLCA6.469e-2838.67GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]
RAB7_SOYBN1.103e-2741.61Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
YPT7_YEAST1.882e-2740.00GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
back to top