DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RABY_DICDI (Ras-related protein RabY OS=Dictyostelium discoideum GN=rabY PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.882e-27
Identity = 64/190 (33.68%), Postives = 114/190 (60.00%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTLPKGQ 806
            DY+YLFK+V+IGD   GK+ L++RF +N +S E + T  + F  ++I +D K++K QIWD+   E +R   +  + YR A G L+VYD T   +F N++ W+K+++ +   N + ++V NK+DL + + + ++ A+S+ +     F+ETS+  S NVE+    ++  + + +  E        PT+P+ Q
Sbjct:    7 DYNYLFKIVIIGDRKTGKTCLMNRFVENTWSEEYRQTNLLHFKVKTIYIDCKIIKLQIWDSQADENFRFNNNNLSNYRSASGFLVVYDCTNENSFSNLKHWIKDIKLYGRPNAINIVVSNKSDLVNEKVIDSDVAKSYCDSLEIPFIETSSKHSSNVEDCFVLLIKNVMKYLETE--------PTIPQQQ 188          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.882e-27
Identity = 68/161 (42.24%), Postives = 108/161 (67.08%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDS---NIVIMLVGNKADL--RHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENA 716
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ ++ +D++   QIWDTAGQER++++  A+YRGA   +LVYDV    +FEN+  W +E L   T S   N   +++GNK D+   + R VS + A+++ A K N  + ETSA E  NV++A
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDA 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPT71_SCHPO (GTP-binding protein ypt71 OS=Schizosaccharomyces pombe GN=ypt71 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.458e-27
Identity = 74/184 (40.22%), Postives = 110/184 (59.78%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN---IVIMLVGNKADL-RHLRAVSTEDAQSFAEKE---NTFFMETSALESLNVENALPEVLTQIYRVVNREALE---VRDD 782
            KVV++GDSGVGK+ L+++F   +FS E K+TIG +F T+ + VDDK+V  Q+WDTAGQER++++  A+YRGA   ++VY+V    +F++VE W +E    T  +      ++VGN+ D     RAVS   A  + + +   N    E SA E+ NV        T ++  V+R ALE    RDD
Sbjct:   10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNV--------TDLFETVSRLALENESSRDD 185          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.193e-27
Identity = 64/161 (39.75%), Postives = 105/161 (65.22%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKADL--RHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENA 716
            L KV+++GD+GVGK++L++++   +FS + K+TIG +F T+ +++DD++V  QIWDTAGQER++++  A+YRGA   +L YDV    +F+ ++ W    LK+       +   +L+GNK D+   + R VS + A+ + A K N  + ETSA E  NV+ A
Sbjct:    8 LLKVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAA 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB40C_MOUSE (Ras-related protein Rab-40C OS=Mus musculus GN=Rab40c PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.476e-27
Identity = 66/169 (39.05%), Postives = 99/169 (58.58%), Query Frame = 3
Query:  246 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVV 752
            YDYL K +L+GDS VGK  +L              + G+++ T +I +D + VK ++WDT+GQ R+  I  +Y RGA G LLVYD+T   +F+ ++RW+KE+ +H    +  +LVGN+  L   R V TE A+++AEK    F E S L + NV     E  T++ R+V
Sbjct:   11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNV----IESFTELSRIV 174          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB40C_HUMAN (Ras-related protein Rab-40C OS=Homo sapiens GN=RAB40C PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.476e-27
Identity = 66/169 (39.05%), Postives = 99/169 (58.58%), Query Frame = 3
Query:  246 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVV 752
            YDYL K +L+GDS VGK  +L              + G+++ T +I +D + VK ++WDT+GQ R+  I  +Y RGA G LLVYD+T   +F+ ++RW+KE+ +H    +  +LVGN+  L   R V TE A+++AEK    F E S L + NV     E  T++ R+V
Sbjct:   11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNV----IESFTELSRIV 174          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB33B_CHICK (Ras-related protein Rab-33B OS=Gallus gallus GN=RAB33B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.476e-27
Identity = 65/179 (36.31%), Postives = 107/179 (59.78%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDP 785
            +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DLR+   V T+ AQ FA+  +    ETSA    + ++     +T  +++ + + L +   P
Sbjct:   31 IFKIIVIGDSNVGKTCLTYRFCAGRFPQRTEATIGVDFRERAVTIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNLASFHSLPSWIEECKQHLLTNDIPRILVGNKCDLRNAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPP 209          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.341e-27
Identity = 65/179 (36.31%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDP 785
            +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H   S+I  +LVGNK DLR    V T+ AQ FA+  +    ETSA    + ++     +T  +++ + + L +   P
Sbjct:   33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLASDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPP 211          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB33B_HUMAN (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.341e-27
Identity = 65/179 (36.31%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDP 785
            +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DLR    V T+ AQ FA+  +    ETSA    + ++     +T  +++ + + L +   P
Sbjct:   33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPP 211          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.341e-27
Identity = 67/183 (36.61%), Postives = 109/183 (59.56%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDP 785
            ++D +   K+V++G+  VGKS+++ R+ K  F+ + K TIGV+F  R I+V+D+ V+  +WDTAGQE + AIT AYYRGA   +LV+  T   +FE V  W +++      +I  +LV NK DL     +  E+A++ A++    F  TS  E LNV N + + L + Y  + +   ++ +DP
Sbjct:    3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNV-NEVFKYLAEKY--LQKLKQQIAEDP 181          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABY_DICDI1.882e-2733.68Ras-related protein RabY OS=Dictyostelium discoide... [more]
RAB7_PRUAR1.882e-2742.24Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
YPT71_SCHPO2.458e-2740.22GTP-binding protein ypt71 OS=Schizosaccharomyces p... [more]
RAB7_VIGAC4.193e-2739.75Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RB40C_MOUSE5.476e-2739.05Ras-related protein Rab-40C OS=Mus musculus GN=Rab... [more]
RB40C_HUMAN5.476e-2739.05Ras-related protein Rab-40C OS=Homo sapiens GN=RAB... [more]
RB33B_CHICK5.476e-2736.31Ras-related protein Rab-33B OS=Gallus gallus GN=RA... [more]
RB33B_PONAB9.341e-2736.31Ras-related protein Rab-33B OS=Pongo abelii GN=RAB... [more]
RB33B_HUMAN9.341e-2736.31Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
RAB23_HUMAN9.341e-2736.61Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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