DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB40B_HUMAN (Ras-related protein Rab-40B OS=Homo sapiens GN=RAB40B PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.220e-26
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 3
Query:  246 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVV 752
            YD+L K +L+GDS VGK  +L+               G+++ T +I +D + VK Q+WDT+GQ R+  I  +Y RGA G +LVYD+    +F+ ++RW+KE+ +H    +  +LVGN+  L   R V TE AQ++AE+    F E S L + N+     E  T++ R+V
Sbjct:   11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNI----TESFTELARIV 174          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB33A_MOUSE (Ras-related protein Rab-33A OS=Mus musculus GN=Rab33a PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.220e-26
Identity = 65/158 (41.14%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA---LESLNVEN 713
            +FK+++IGDS VGK+ L  RF    F  ++++TIGV+F  +++ ++ + +K Q+WDTAGQER+R ++   YYR     + VYDVT+  +F N++ W++E   H    +V  +LVGNK DLR    V +  A  FA+  N    ETSA    ES NVE+
Sbjct:   36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVES 193          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB33A_HUMAN (Ras-related protein Rab-33A OS=Homo sapiens GN=RAB33A PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.220e-26
Identity = 65/158 (41.14%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA---LESLNVEN 713
            +FK+++IGDS VGK+ L  RF    F  ++++TIGV+F  +++ ++ + +K Q+WDTAGQER+R ++   YYR     + VYDVT+  +F N++ W++E   H    +V  +LVGNK DLR    V +  A  FA+  N    ETSA    ES NVE+
Sbjct:   36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVES 193          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.220e-26
Identity = 64/161 (39.75%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKADL--RHLRAVSTEDAQSF-AEKENTFFMETSALESLNVENA 716
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ ++ DD++   QIWDTAGQER++++  A+YRGA   +LV+DV    +F+N+  W +E           N   +++GNK D+   + R VS + A+++ A K N  + ETSA E  NV+ A
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAA 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.220e-26
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            KVVL+G+  VGK++L+ R+++N+F+ + + T+   F  + + +  K ++  IWDTAGQERY A+   YYR + GA++VYD+T   +F     W+KEL+      + + +VGNK DL   R VS +DA  +AE        TSA +S  V     ++  +I
Sbjct:   18 KVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRI 177          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.550e-26
Identity = 62/147 (42.18%), Postives = 93/147 (63.27%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA 689
            +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DLR    V T+ AQ FA+  +    ETSA
Sbjct:   33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSA 179          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.550e-26
Identity = 64/161 (39.75%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADL--RHLRAVSTEDAQSFA-EKENTFFMETSALESLNVENA 716
            L K++++GDSGVGK++L+++F   +FS + K+TIG +F T+ ++ +D++   QIWDTAGQER++++  A+YRGA   +L YDV    +FE++ RW +E           N   +L+GNK D+     R VS + A+++   K N  + ETSA +  NVE A
Sbjct:    8 LLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEA 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB44_HUMAN (Ras-related protein Rab-44 OS=Homo sapiens GN=RAB44 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 4.636e-26
Identity = 62/153 (40.52%), Postives = 91/153 (59.48%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNV 707
            DYLF V+ +GDS VGK++ L    +N F+    +T+GV+F  +++ VD+K    Q+WDTAGQE Y ++T    R A G +L+YD+T   +F +V  WL  L+D     +VI+L+GNK D    R VS E  Q  A++   +F E SA    N+
Sbjct:  533 DYLFHVIFLGDSNVGKTSFLHLLHQNSFATGLTATVGVDFRVKTLLVDNKCFVLQLWDTAGQE-YHSMTRQLLRKADGVVLMYDITSQESFAHVRYWLDCLQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQELGVYFGECSAALGHNI 684          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.055e-26
Identity = 67/177 (37.85%), Postives = 112/177 (63.28%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDD-KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI--------MLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENALPEVLTQIYR 746
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L    DS + +        +L+ NK DL    AVS +    F+ KEN F  + ETS  E+ N+  A+  ++ ++ R
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDL----DSKLTLPNGEPVPCLLLANKCDLSPW-AVSRDQIDRFS-KENGFTGWTETSVKENKNINEAMRVLIEKMMR 175          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.055e-26
Identity = 67/177 (37.85%), Postives = 112/177 (63.28%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDD-KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI--------MLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENALPEVLTQIYR 746
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L    DS + +        +L+ NK DL    AVS +    F+ KEN F  + ETS  E+ N+  A+  ++ ++ R
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDL----DSKLTLPNGEPVPCLLLANKCDLSPW-AVSRDQIDRFS-KENGFTGWTETSVKENKNINEAMRVLIEKMMR 175          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB40B_HUMAN1.220e-2637.28Ras-related protein Rab-40B OS=Homo sapiens GN=RAB... [more]
RB33A_MOUSE1.220e-2641.14Ras-related protein Rab-33A OS=Mus musculus GN=Rab... [more]
RB33A_HUMAN1.220e-2641.14Ras-related protein Rab-33A OS=Homo sapiens GN=RAB... [more]
RAB7_GOSHI1.220e-2639.75Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB21_GEOCY1.220e-2636.88Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RB33B_MOUSE3.550e-2642.18Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RAB7_MESCR3.550e-2639.75Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
RAB44_HUMAN4.636e-2640.52Ras-related protein Rab-44 OS=Homo sapiens GN=RAB4... [more]
RAB7L_PONAB6.055e-2637.85Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_HUMAN6.055e-2637.85Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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