DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB33_CIOIN (Putative Ras-related protein Rab-33 OS=Ciona intestinalis GN=COS41.2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.055e-26
Identity = 64/196 (32.65%), Postives = 116/196 (59.18%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTLPKGQIIILVQKIM 833
            +FK+++IGDS VGK+ L  RF   +F  ++++TIGV+F  R++ +D + +K Q+WDTAGQER+R ++   YYR     +  YDVT+  +F+ +  W++E   ++   S I  +LVGNK DL+    V T  A  FA+  +    ETSA     + N     LT  +++ +++ + ++ D P + +  ++ + ++++
Sbjct:   15 VFKIIVIGDSDVGKTCLTYRFCTGKFPEKTEATIGVDFRERTLDIDGEQIKLQLWDTAGQERFRKSMVPHYYRNVHAVVFTYDVTKGRSFQGLPSWIEECERYSLNASEIPRILVGNKCDLKDQAEVDTNSATRFADANSMPLFETSAKADSEMGNIEAIFLTVAHKLKSQKPM-MKQDYPNMKRATVLSVDKEVL 209          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 6.055e-26
Identity = 61/157 (38.85%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNV 707
            ++D +   K+V++G+  VGKS+++ R+ K  F+ + K TIGV+F  R I+V+D+ V+  +WDTAGQE + AIT AYYRGA   +LV+  T   +FE +  W +++      +I   LV NK DL     +  E+A+  A++    F  TS  E LNV
Sbjct:    3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV 158          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB40B_MOUSE (Ras-related protein Rab-40B OS=Mus musculus GN=Rab40b PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.908e-26
Identity = 63/169 (37.28%), Postives = 96/169 (56.80%), Query Frame = 3
Query:  246 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVV 752
            YD+L K +L+GDS VGK  +L+               G++  T +I +D + VK Q+WDT+GQ R+  I  +Y RGA G +LVYD+    +F+ + RW+KE+ +H    +  +LVGN+  L   R V TE AQ++AE+    F E S L + N+     E  T++ R+V
Sbjct:   11 YDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDHKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVVLVYDIANRWSFDGINRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNI----TESFTELARIV 174          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.349e-25
Identity = 63/167 (37.72%), Postives = 97/167 (58.08%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL----RHLRAVSTEDAQSFAE---KENTFFMETSALESLNVENALPEVLTQI 740
            K+VL+G  GVGK+  ++R+  N+F     STIG  F+ + + V+D  V+ QIWDTAGQER+R++   YYR A   +L YDVT   +F+ +  WL EL+ +  S+I+I +VG K DL      LR V  E    +A    ++++   E SA +   VE     ++T++
Sbjct:    7 KIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKL 173          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7L_RAT (Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.762e-25
Identity = 64/164 (39.02%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIR-VDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENAL 719
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L       +   +  +L+ NK+DL    AVS +    F+ KEN F  + ETS  E+ N+  A+
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDLSPW-AVSRDQIDRFS-KENGFTGWTETSVKENKNINEAM 166          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7L_MOUSE (Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.762e-25
Identity = 64/164 (39.02%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIR-VDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENAL 719
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L       +   +  +L+ NK+DL    AVS +    F+ KEN F  + ETS  E+ N+  A+
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDLSPW-AVSRDQIDRFS-KENGFTGWTETSVKENKNINEAM 166          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB6C_HUMAN (Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.301e-25
Identity = 54/157 (34.39%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEV 728
            FK+V +G+  V K++L++RF  + F    ++ IG++F ++++ ++D  +  ++WDTAGQER R++   Y R +  A++VYD+T   +F+   +W+ ++R    S+++I LVGN+ DL   R VS E+ +  A+  N  F+ET A    NV+     V
Sbjct:   14 FKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRV 170          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB44_MOUSE (Ras-related protein Rab-44 OS=Mus musculus GN=Rab44 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.301e-25
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNV 707
            D DYL+ VV +GDS VGK++ L     + F+    +T+GV+F  +++ VD+K    Q+WDTAGQERY ++T    R A G +L+YDVT   +F +V  WL  L+D     + ++L+GNK D    R V TE  +  A++    F E SA    N+
Sbjct:  533 DPDYLYHVVFLGDSNVGKTSFLHLLHHDAFATGLTATVGVDFRVKNLLVDNKTFALQLWDTAGQERYHSLTRQLLRKAEGVVLMYDVTSQESFTHVRYWLDCLQDAGVEGVAMVLLGNKMDCEEERQVPTEAGRRLAQELGVSFGECSAALGHNI 687          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB40L_HUMAN (Ras-related protein Rab-40A-like OS=Homo sapiens GN=RAB40AL PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.925e-25
Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVV 752
            D  YD+L K +L+GD  VGKS +L                G+++ T +I +D + VK ++WDT+GQ R+  I  +Y RGA G +LVYD+    +FE ++RW+K++ +H    +  +LVGN+  L   R V  E AQ++AE+    F E S L + N+     E  T++ R+V
Sbjct:    8 DQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNI----IESFTELARIV 174          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB40A_HUMAN (Ras-related protein Rab-40A OS=Homo sapiens GN=RAB40A PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 3.925e-25
Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVV 752
            D  YD+L K +L+GD  VGKS +L                G+++ T +I +D + VK ++WDT+GQ R+  I  +Y RGA G +LVYD+    +FE ++RW+K++ +H    +  +LVGN+  L   R V  E AQ++AE+    F E S L + N+     E  T++ R+V
Sbjct:    8 DQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNI----IESFTELARIV 174          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB33_CIOIN6.055e-2632.65Putative Ras-related protein Rab-33 OS=Ciona intes... [more]
RAB23_MOUSE6.055e-2638.85Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RB40B_MOUSE7.908e-2637.28Ras-related protein Rab-40B OS=Mus musculus GN=Rab... [more]
RYL2_YARLI1.349e-2537.72Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
RAB7L_RAT1.762e-2539.02Ras-related protein Rab-7L1 OS=Rattus norvegicus G... [more]
RAB7L_MOUSE1.762e-2539.02Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab... [more]
RAB6C_HUMAN2.301e-2534.39Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6... [more]
RAB44_MOUSE2.301e-2539.35Ras-related protein Rab-44 OS=Mus musculus GN=Rab4... [more]
RB40L_HUMAN3.925e-2536.05Ras-related protein Rab-40A-like OS=Homo sapiens G... [more]
RB40A_HUMAN3.925e-2536.05Ras-related protein Rab-40A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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