DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RABT2_DICDI (Ras-related protein RabT2 OS=Dictyostelium discoideum GN=rabT2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.695e-25
Identity = 68/173 (39.31%), Postives = 101/173 (58.38%), Query Frame = 3
Query:  234 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIR-VDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAE-KENTFFMETSALESLNVENALPEVLTQI 740
            ADDDY+ L KV+++GD   GK ++L R+  NEF L   S+IGV+F  R    V+ K  K QIWD    ER+R+IT AYYRGA G +L+YD T   +F N++ W+ E+  +    +N  I+++GNK DL +   +    ++ F + K  T F   SA +S+N+      +  QI
Sbjct:   19 ADDDYE-LIKVLMLGDYKTGKGSVLRRYHYNEFEL-GVSSIGVDFVIRDYGIVNGKYYKIQIWDANSCERFRSITQAYYRGAHGFMLLYDCTNQESFNNLQFWINEIINKSPNSNNSTIVIIGNKCDLVNDIKIDPIKSKLFCDSKSITSFQNVSAKDSININEPFEILFKQI 189          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB21_DICDI (Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.544e-24
Identity = 57/156 (36.54%), Postives = 92/156 (58.97%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            D +  FKVVL+G+  VGK++++ R+  N F+ +   T    F  + I +  K +   IWDTAGQER+ A+   YYRG+ GAL+VYD+T + +F   + W+KEL+    ++I + ++GNK DL   R +   DA+++A+        TSA  +  +E
Sbjct:    3 DTEKSFKVVLLGEGCVGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTAGQERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLEKTRVIPLADAEAYAKSVGAIHYSTSAKLNKGIE 158          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RABT1_DICDI (Ras-related protein RabT1 OS=Dictyostelium discoideum GN=rabT1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.322e-24
Identity = 64/186 (34.41%), Postives = 107/186 (57.53%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSI-RVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAE-KENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDD 782
            DDDY+ L KV+++GD+  GKS++L R+  NEF L   S+IGV+F  +    V+ K  K QIWD    +R+R +T +YY+GA G +L+YD T   +F N++ W+ E+  +    +N  I+++GNK DL +   +    ++ F + K  T F   SA +S+N+      +  QI +  + + +  + D
Sbjct:   25 DDDYE-LVKVIILGDNKTGKSSILRRYHYNEFEL-GVSSIGVDFIKKDYGMVNGKYYKIQIWDVNSCDRFRLLTHSYYKGAHGFMLLYDCTNQESFNNLQFWINEIINKSPNSNNSTIVIIGNKCDLVNGIKIDPIKSKQFCDSKSITSFQNVSAKDSININEPFEILFRQIIKKGHSQTVSPKHD 208          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB32_HUMAN (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 3.322e-24
Identity = 67/184 (36.41%), Postives = 111/184 (60.33%), Query Frame = 3
Query:  234 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDK-VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENALPEVLTQIYRVVNREA 764
            A +  ++LFKV++IG+ GVGK++++ R+    FS   ++TIGV+FA + +  D + +V+ Q+WD AGQER+  +T  YY+ AVGA +V+D++R  TFE V +W  +L         S I  +L+ NK D     + S      F  KE+ F  + ETSA +++N+E A   ++ +I  +VN ++
Sbjct:   18 APETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFC-KEHGFAGWFETSAKDNINIEEAARFLVEKI--LVNHQS 198          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 7.402e-24
Identity = 68/209 (32.54%), Postives = 118/209 (56.46%), Query Frame = 3
Query:  225 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDK-VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEN-TFFMETSALESLN--------VENALPEVLTQIYRVVNREALEVRDDPPTL-PKGQ 806
            A  A +  ++LFKV++IG+ GVGK++++ R+    FS   ++TIGV+FA + +  D + +V+ Q+WD AGQER+  +T  YY+ A+GA +V+D++R  TF+ V +W  +L         S I  +L+ NK D +   + S      F +    T + ETSA +++N        VEN L    +     ++ + +++ ++PPT  P+ Q
Sbjct:   13 ATAAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFPSEEIDLDRIKLVEEPPTTKPRSQ 221          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.154e-23
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVD-DKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENA 716
            ++L+K+++IGD GVGK++++ R+    FS   ++TIGV+FA + +  D + VV+ Q+WD AGQER+  +T  YYR A+GA +V+DVTR  TFE V +W  +L           + ++L+ NK D      ++         KE+ F  + ETSA E++N++ A
Sbjct:    7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEA 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.154e-23
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 3
Query:  249 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVD-DKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENA 716
            ++L+K+++IGD GVGK++++ R+    FS   ++TIGV+FA + +  D + VV+ Q+WD AGQER+  +T  YYR A+GA +V+DVTR  TFE V +W  +L           + ++L+ NK D      ++         KE+ F  + ETSA E++N++ A
Sbjct:    7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEA 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.154e-23
Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 3
Query:  225 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDK-VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEN-TFFMETSALESLNVENA 716
            A  A +  ++LFKV++IG+ GVGK++++ R+    FS   ++TIGV+FA + +  D + +V+ Q+WD AGQER+  +T  YY+ AVGAL+V+D++R   FE V +W  +L         S I  +L+ NK D +     +      F ++   T + ETSA +++N++ A
Sbjct:   17 AAAAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEA 186          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.813e-23
Identity = 58/166 (34.94%), Postives = 99/166 (59.64%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRS-IRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL-RHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRV 749
            +K++LIG SGVGKS+++ +F  N        TIG  FA++  I  + K +K  IWDTAGQER+R+IT  YY  ++G L+V+DVT   +F++V  W+ +LR +  +   I++V NK D+ ++   VS  + + F    +  ++  S+ ES  V N   +++ ++  +
Sbjct:   14 YKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDIDKNNWRVSENEIKKFCRDNDCDYVFASSFESDTVNNLFGKMIDKMSEI 179          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.069e-22
Identity = 59/192 (30.73%), Postives = 106/192 (55.21%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR------DHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTLPKGQIIIL 818
            K++LIGD  VGK+++L R   ++F+ E KSTIG +F +++   +D +   Q+WDTAGQE+Y  +TSA++R +   +LV+D++   +F N+  W K+ +      D T+  + I+L+ NK+D        +E  Q   + +   + E SA  S+N++ ++ +++  I         E  +D P      I +L
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPILLLANKSDSLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVIIEQDKDSDNEQFNDSPDEETSSITLL 202          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABT2_DICDI6.695e-2539.31Ras-related protein RabT2 OS=Dictyostelium discoid... [more]
RAB21_DICDI2.544e-2436.54Ras-related protein Rab-21 OS=Dictyostelium discoi... [more]
RABT1_DICDI3.322e-2434.41Ras-related protein RabT1 OS=Dictyostelium discoid... [more]
RAB32_HUMAN3.322e-2436.41Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
RAB32_MOUSE7.402e-2432.54Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RAB38_MOUSE2.154e-2337.42Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAB38_HUMAN2.154e-2337.42Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RAB32_PIG2.154e-2335.88Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RABL_MIMIV2.813e-2334.94Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
RB32D_DICDI1.069e-2230.73Ras-related protein Rab-32D OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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