DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB32B_DICDI (Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.823e-22
Identity = 66/180 (36.67%), Postives = 103/180 (57.22%), Query Frame = 3
Query:  240 DDYD---YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVD-DKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENALPEVLTQIYRV 749
            DD D   +L+KV+LIGD  VGKS+++ R+    FS   K TIGV+F+ + I  + +K+V  Q+WD AG ER+  +T  YYR A+ A++V+D++R  TF+ V +W +++           I ++L+ NK+DL     V +E    F  KEN F  +  TSA    N+  A+  +  +I  V
Sbjct:   51 DDTDIEKHLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEKNKIVSLQLWDIAGHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPIPVLLLANKSDL-STSYVDSEMLDRFC-KENNFIGWFATSASNDTNINEAMHFLTKEILEV 228          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.061e-22
Identity = 59/181 (32.60%), Postives = 97/181 (53.59%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRDDPPTLP 797
            +FK++LIGD G GK+ L+ R    EF ++  +T+GVE        +  V +  +WDTAGQERY  +   Y+  +  A++++DV    T+ NV+RW ++L      NI I++ GNK D+ H +  + +    F  K N + +E SA  + NVE     +L    ++V   +L++   P   P
Sbjct:   10 IFKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDL-VRVCGNIPIVICGNKVDIMHKK--TWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLR---KLVGDPSLQLVQSPAIQP 184          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.182e-21
Identity = 68/188 (36.17%), Postives = 106/188 (56.38%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI------YRVVNRE---ALEVRDDPPT 791
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + +DDKV    I DTAGQE Y A+   Y R   G LLVY VT   +F+ +  + ++++   DS+ I +++VGNK DL + R VS ED    A++ N  F+ETSA +++NV+ A   ++  +      Y  +NR+     E+RD   T
Sbjct:   11 YKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYR-KQVVIDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSLIRLVRDDGGKYNSMNRQLDNTNEIRDSELT 197          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB24_HUMAN (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.543e-21
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLES-KSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL----RHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEV 728
            KVV++G   VGK++L+ R+  + F +   ++TIG  F  + + V D+ V   IWDTAG ERY A++  YYRGA  A++ YD+T   +FE  + W+KELR   +    I L G K+DL    R  R V   D Q +A+       ETS+    +V+    +V
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS-LEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKV 168          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.003e-21
Identity = 59/169 (34.91%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNRE 761
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + +DD+     + DTAGQE Y A+   Y R   G +LVY +T  ++FE V  + +++R   D  +  ++LVGNK DL   R VS+++ +  A+     F ETSA + + V++   EV+ +I R +N+E
Sbjct:   10 YKIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVVREIRR-MNKE 176          

HSP 2 Score: 20.4014 bits (41), Expect = 2.003e-21
Identity = 6/13 (46.15%), Postives = 8/13 (61.54%), Query Frame = 2
Query:  833 VSAVKKTGCCSCI 871
            +S  +  GCC CI
Sbjct:  191 MSDTRNDGCCGCI 203          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.016e-21
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVS--TEDAQSFAEKENTFFMETSALESLNV 707
            KV+++GD  VGK+ L++RF K+ F    K+TIGV+F      V       Q+WDTAGQER++ I S YYRGA   ++V+++    + E+ ++WL + L+++  SN+++ LVG+K DL      S   +DA   A++    +   S+L   NV
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWAVSSLTGENV 205          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.633e-21
Identity = 55/155 (35.48%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENA 716
            K+++IG  GVGK++LL R+    F  + ++T+G    ++ I ++D  +K QIWDT GQER+R++ S +Y+G+ G +L +DVT   +FE +E W  ++   T   +    ++++GNK DL   R V  E AQ + ++++  + E SA   +NV  A
Sbjct:   10 KLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPMEQPYPMVVLGNKIDLED-RQVPQEVAQGWCKEKDIPYFEVSAKNDINVVQA 163          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB36_HUMAN (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 2.633e-21
Identity = 57/134 (42.54%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFA 653
            L KVV++GD  VGK++L+ RF KN F  + K+TIGV+F      +       QIWDTAGQE+++ I SAYYRGA   +  +D+T   T E+  +WL++ LR++   +  I LVG K DL  L   + E A++ A
Sbjct:  123 LSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDL--LSGAACEQAEADA 254          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB34_RAT (Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.633e-21
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVS--TEDAQSFAEKENTFFMETSALESLNV 707
            KV+++GD  VGK+ L++RF K+ F    K+TIGV+F      V       Q+WDTAGQER++ I S YYRGA   ++V+++    + E+ ++WL + L+++  SN+++ LVG+K DL      S   +DA   A++    +   S+L   NV
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHSKQWLADALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWSVSSLTGENV 205          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 2.633e-21
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLES-KSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL----RHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEV 728
            KVV++G   VGK++L+ R+  + F +   ++TIG  F  + + V D+ V   IWDTAG ERY A++  YYRGA  A++ YD+T   +FE  + W+KELR   +    I L G K+DL    R  R V   D Q +A+       ETS+    +V+    +V
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS-LEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKV 168          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB32B_DICDI1.823e-2236.67Ras-related protein Rab-32B OS=Dictyostelium disco... [more]
RANL_DROME4.061e-2232.60GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAS1_YEAST1.182e-2136.17Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]
RAB24_HUMAN1.543e-2137.27Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
RAS3_RHIRA2.003e-2134.91Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAB34_MOUSE2.016e-2136.84Ras-related protein Rab-34 OS=Mus musculus GN=Rab3... [more]
RAB7B_BOVIN2.633e-2135.48Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]
RAB36_HUMAN2.633e-2142.54Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]
RAB34_RAT2.633e-2136.84Ras-related protein Rab-34 OS=Rattus norvegicus GN... [more]
RAB24_MOUSE2.633e-2137.27Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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