DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.469e-20
Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF 671
            ++  D   K+V++GD   GK++L + F +  F    K TIG++F  R I +   + V  QIWD  GQ     +   Y  GA G LLVYD+T + +FEN+E W   +K++ + +++  ++ LVGNK DL H+R +  E    F + EN F
Sbjct:    6 EESQDRQLKIVVLGDGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFCQ-ENGF 153          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.106e-19
Identity = 56/169 (33.14%), Postives = 94/169 (55.62%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH--TDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF--FMETSALESLNVENALPEVL 731
            +DD     K++++G    GK++++ R+  N F  + K TIGV+F  + + +  + V  Q+WD AGQER+  +T  Y++ A GA++V+D TR  TF   + W  ++ D+   + N+  +L+ NK DL        ED  +F E +N F  +  TSA E   +  AL E++
Sbjct:   22 NDDEAISLKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDI-DYCFNNENLPTILLANKCDLLTPPYTFPEDINTFCE-QNRFNKYFYTSAKEDTGINEALEELV 188          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAS1_RHIRA (Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.106e-19
Identity = 62/194 (31.96%), Postives = 101/194 (52.06%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEVRD-----DPPTLPKGQIIILV 821
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + +D +     + DTAGQE Y A+   Y R   G LLVY +T  ++FE +  + +++    D +   ++LVGNK DL   R VS+++ +  A+     F+ETSA + +NV+ A  EV+  I R    +     D     D P +   +  IL+
Sbjct:   11 YKLVMVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDSETALLDVLDTAGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQICRVKDRDYFPMVLVGNKCDLEGDRQVSSQEGRDLAKNFGCQFIETSAKQRINVDEAFFEVVRDIRRYNKEQETRGHDQFGIQDAPDVASDKCCILM 203          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.106e-19
Identity = 55/151 (36.42%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   +K  +WDTAGQE++  +   YY  A  A++++DVT  +T++NV  W ++L      NI I+L GNK D++  R V  +   +F  K+N  + + SA  + N E
Sbjct:   13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTI-TFHRKKNLQYYDISAKSNYNFE 160          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RBL2A_HUMAN (Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 3
Query:  222 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNV 707
            G Y ADD+     K++ +GDS VGKS L+ RF  + F  +  ST  +     +  VD K +    WDTAGQER++++ ++YY  A   ++V+D+ R VT+ N+  W  ELR+     I  ++V NK D  ++    T+ + +FA+K +      SA +  NV
Sbjct:   14 GKYDADDNV----KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFR-PEIPCIVVANKIDDINV----TQKSFNFAKKFSLPLYFVSAADGTNV 166          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYR 746
            +K+V++G  G GKS L  +  ++ F  E   TI   +  + + +DD+V    + DTAGQE Y A+   Y R   G LLVY +T   +FE +  + ++ LR        I++VGNK DL   R VS ++ +S A +    F+ETSA   +NVENA  +++ +I R
Sbjct:    9 YKLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIEESYRKQCV-IDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRR 171          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 58/180 (32.22%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  234 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREALEV 773
            A+++    FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+N  + + SA  + N E     +  ++    N E +E+
Sbjct:    2 AENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEM 178          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 58/163 (35.58%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL   R VS E+A++ A++ N  ++ETSA    NV+    +++ +I
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 58/163 (35.58%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL   R VS E+A++ A++ N  ++ETSA    NV+    +++ +I
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 58/163 (35.58%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL   R VS E+A++ A++ N  ++ETSA    NV+    +++ +I
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB28_PONAB8.469e-2036.24Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
RB32C_DICDI1.106e-1933.14Ras-related protein Rab-32C OS=Dictyostelium disco... [more]
RAS1_RHIRA1.106e-1931.96Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1... [more]
GSP1_YEAST1.106e-1936.42GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
RBL2A_HUMAN1.445e-1934.57Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2... [more]
RAS_LACBI1.445e-1935.98Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RAN_DANRE1.445e-1932.22GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RALA_SAGOE1.445e-1935.58Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT1.445e-1935.58Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE1.445e-1935.58Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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