DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---DHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYR 746
            +KVV++G  GVGKS +  +F  ++F      TI   + T+ +R+D++     I DTAGQ  + A+   Y RG  G ++ Y VT   +F+   ++ KEL     HT   I ++LVGNK DL   R VSTE+  + A   N  F ETSA     +++A   ++ +I R
Sbjct:   21 YKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKF-KELIFQVRHT-YEIPLVLVGNKIDLEQFRQVSTEEGMNLARDYNCAFFETSAALRFGIDDAFQGLVREIRR 183          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:    2 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 149          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 52/151 (34.44%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVE 710
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++ R V  +   +F  K+N  + E SA  + N E
Sbjct:    2 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 149          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIT2_MOUSE7.926e-1835.54GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RANB1_TOBAC7.926e-1834.44GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RANA1_TOBAC7.926e-1834.44GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH7.926e-1834.44GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC7.926e-1834.44GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH7.926e-1834.44GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC7.926e-1834.44GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH7.926e-1834.44GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RAN1B_LOTJA7.926e-1834.44GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA7.926e-1834.44GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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