DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOP1 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ribH PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.561e-39
Identity = 70/139 (50.36%), Postives = 107/139 (76.98%), Query Frame = 3
Query:  240 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            +FA+V  RFNE +   L++GAL+ FK++ V+E+NID+ WVPG+FEI ++A++L KSGKY  V+C+G V+RG T+HYD V    + G+ +  +++ VP IFG++T +N++QA+ RAG K+GNKG +AA+ AIEMA+L E+
Sbjct:   14 KFAIVAGRFNEFIVSKLIDGALDAFKRHGVEEDNIDLAWVPGAFEIPLIAKKLAKSGKYAGVVCLGTVIRGATSHYDYVCGEVSKGIANVSLDTEVPVIFGIVTTENIEQAIERAGTKAGNKGFDAAMAAIEMANLLEN 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_THEPX (6,7-dimethyl-8-ribityllumazine synthase OS=Thermoanaerobacter sp. (strain X514) GN=ribH PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.957e-39
Identity = 74/141 (52.48%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EG +F +VV+RFNE +T  LLEGAL+  K++    ENI++ WVPG+FEI ++A+++ +S +Y+AV+ +GAV+RG+T H+D VAN  + G+    +++ VP IFGVLT D ++QA+ RAG K GNKG EAA+TAIEMA+L E
Sbjct:   11 EGKKFGIVVSRFNEFITNKLLEGALDALKRHGALNENIEIAWVPGAFEIPLIAKKMAESKRYDAVIALGAVIRGETPHFDYVANEVSKGIAKISLDTEVPVIFGVLTTDTIEQAIVRAGTKGGNKGFEAAVTAIEMANLME 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOPS (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=ribH PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.957e-39
Identity = 71/139 (51.08%), Postives = 106/139 (76.26%), Query Frame = 3
Query:  240 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            +FA+V  RFNE +   L+ GAL+ FK++ V+EENID+ WVPG+FEI ++A++L KSGKY  V+C+G V+RG T+HYD V    + G+ +  +++ VP IFG++T +N++QA+ RAG K+GNKG +AA+ AIEMA+L E+
Sbjct:   14 KFAIVAGRFNEFIVSKLIGGALDAFKRHGVEEENIDLAWVPGAFEIPLIAKKLAKSGKYAGVVCLGTVIRGATSHYDYVCGEVSKGIANVSLDTEVPVIFGIVTTENIEQAIERAGTKAGNKGFDAAMAAIEMANLLEN 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOPE (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium perfringens GN=ribH PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.957e-39
Identity = 71/139 (51.08%), Postives = 106/139 (76.26%), Query Frame = 3
Query:  240 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            +FA+V  RFNE +   L+ GAL+ FK++ V+EENID+ WVPG+FEI ++A++L KSGKY  V+C+G V+RG T+HYD V    + G+ +  +++ VP IFG++T +N++QA+ RAG K+GNKG +AA+ AIEMA+L E+
Sbjct:   14 KFAIVAGRFNEFIVSKLIGGALDAFKRHGVEEENIDLAWVPGAFEIPLIAKKLAKSGKYAGVVCLGTVIRGATSHYDYVCGEVSKGIANVSLDTEVPVIFGIVTTENIEQAIERAGTKAGNKGFDAAMAAIEMANLLEN 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_DEHSC (6,7-dimethyl-8-ribityllumazine synthase OS=Dehalococcoides sp. (strain CBDB1) GN=ribH PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.780e-39
Identity = 72/142 (50.70%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            +GL+ ALVV+RFNE +T  LL GA ++ +++ V  +N DV WVPG+FEI +VAQ+L KSG+Y+AV+C+GAV+RG T H++ V++  + G+   G+++G+P IFGV+T D+++QA+ RAG K GNKG +AA  AIE+A+L ++
Sbjct:   12 QGLKIALVVSRFNEFITSKLLSGAKDSLERHGVSADNTDVAWVPGAFEIPLVAQKLAKSGRYDAVVCLGAVIRGSTPHFEYVSSEVSKGIARVGLDAGLPVIFGVITADSIEQAIERAGTKMGNKGFDAATQAIEVANLMKN 153          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_DEHSB (6,7-dimethyl-8-ribityllumazine synthase OS=Dehalococcoides sp. (strain BAV1) GN=ribH PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.780e-39
Identity = 72/142 (50.70%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            +GL+ ALVV+RFNE +T  LL GA ++ +++ V  +N DV WVPG+FEI +VAQ+L KSG+Y+AV+C+GAV+RG T H++ V++  + G+   G+++G+P IFGV+T D+++QA+ RAG K GNKG +AA  AIE+A+L ++
Sbjct:   12 QGLKIALVVSRFNEFITSKLLSGAKDSLERHGVSADNTDVAWVPGAFEIPLVAQKLAKSGRYDAVVCLGAVIRGSTPHFEYVSSEVSKGIARVGLDAGLPVIFGVITADSIEQAIERAGTKMGNKGFDAATQAIEVANLMKN 153          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_HAEDU (6,7-dimethyl-8-ribityllumazine synthase OS=Haemophilus ducreyi GN=ribH PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.016e-38
Identity = 75/149 (50.34%), Postives = 110/149 (73.83%), Query Frame = 3
Query:  207 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +TG L    GL+F++V ARFN+ +   LL GA++T  ++   E +ID VWVPG+FEI +VA+++ +SGKY+AV+C+G V+RG TTHYD V N  A G+ +  + +GVP +FGVLT ++++QA+ RAG K+GNKGAE AL AIEM ++ +
Sbjct:    4 ITGNLVAT-GLKFSIVTARFNDFINDKLLSGAVDTLVRHGAVESDIDTVWVPGAFEIPLVAKKMAESGKYDAVICLGTVIRGSTTHYDYVCNEVAKGIGAVALQTGVPIMFGVLTTESIEQAIERAGTKAGNKGAECALGAIEMVNVLK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ACTPL (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae GN=ribH PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.016e-38
Identity = 75/149 (50.34%), Postives = 108/149 (72.48%), Query Frame = 3
Query:  207 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +TG L    GL+F +V ARFN+ +   LL GA++T  ++   E +ID  WVPG+FEI +VA+++  SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIE+ ++ +
Sbjct:    4 ITGNLVAT-GLKFGIVTARFNDFINDKLLSGAIDTLVRHGAYENDIDTAWVPGAFEIPLVAKKMANSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIEIVNVLK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CHLSY (6,7-dimethyl-8-ribityllumazine synthase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=ribH PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.327e-38
Identity = 73/140 (52.14%), Postives = 108/140 (77.14%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            GLR A+VV+R+N+L+T  LLEGA +   ++ V  ++ID+ WVPGSFE+ +V  +L +S +Y+A++ +GAV+RG TTH++ VA +A+SG+    + +GVPCIFGV+T DN++QA+ RAG K+GNKG EAA  AIEMA+L +
Sbjct:   12 GLRIAIVVSRWNDLITNRLLEGARDGLLRHGVAADHIDIAWVPGSFELPLVCHRLAESSRYDAIIALGAVIRGATTHHEHVAAAASSGIAQVSLQTGVPCIFGVITTDNIEQAIERAGTKAGNKGFEAATAAIEMATLLQ 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CHLAA (6,7-dimethyl-8-ribityllumazine synthase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ribH PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.327e-38
Identity = 73/140 (52.14%), Postives = 108/140 (77.14%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            GLR A+VV+R+N+L+T  LLEGA +   ++ V  ++ID+ WVPGSFE+ +V  +L +S +Y+A++ +GAV+RG TTH++ VA +A+SG+    + +GVPCIFGV+T DN++QA+ RAG K+GNKG EAA  AIEMA+L +
Sbjct:   12 GLRIAIVVSRWNDLITNRLLEGARDGLLRHGVAADHIDIAWVPGSFELPLVCHRLAESSRYDAIIALGAVIRGATTHHEHVAAAASSGIAQVSLQTGVPCIFGVITTDNIEQAIERAGTKAGNKGFEAATAAIEMATLLQ 151          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_CLOP14.561e-3950.366,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_THEPX5.957e-3952.486,7-dimethyl-8-ribityllumazine synthase OS=Thermoa... [more]
RISB_CLOPS5.957e-3951.086,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOPE5.957e-3951.086,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_DEHSC7.780e-3950.706,7-dimethyl-8-ribityllumazine synthase OS=Dehaloc... [more]
RISB_DEHSB7.780e-3950.706,7-dimethyl-8-ribityllumazine synthase OS=Dehaloc... [more]
RISB_HAEDU1.016e-3850.346,7-dimethyl-8-ribityllumazine synthase OS=Haemoph... [more]
RISB_ACTPL1.016e-3850.346,7-dimethyl-8-ribityllumazine synthase OS=Actinob... [more]
RISB_CHLSY1.327e-3852.146,7-dimethyl-8-ribityllumazine synthase OS=Chlorof... [more]
RISB_CHLAA1.327e-3852.146,7-dimethyl-8-ribityllumazine synthase OS=Chlorof... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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