DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CARHZ (6,7-dimethyl-8-ribityllumazine synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ribH PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.051e-36
Identity = 72/141 (51.06%), Postives = 104/141 (73.76%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +GL+  ++V+RFNE +T+ LL GAL+   ++ V+  NIDV+WVPG+FEI +VA++      Y+A++C+GAV+RG T H+D VA   A G+ + G+ +  P IFGVLT D ++QA+ RAG K+GNKG EAAL AIEMA+LF+
Sbjct:   11 KGLKIGIIVSRFNEFITQKLLAGALDCLTRHEVENTNIDVIWVPGAFEIPLVAKRAVHKD-YDAIICLGAVIRGATPHFDYVAAEVAKGIAAVGLEANKPVIFGVLTTDTIEQAIERAGTKAGNKGWEAALAAIEMANLFK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAES (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ribH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.051e-35
Identity = 73/139 (52.52%), Postives = 106/139 (76.26%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V++ NIDV +VPG+FEI +VA++L + G+Y+AV+ +G V+RG T+HYD V N  A GV  A   S  P IFGVLT ++++QA+ RAG K+GNKG+EAA++AIEMA+L +
Sbjct:   12 LKIAIVVSRFNDFITTRLLEGAKDTLIRHEVEDTNIDVAYVPGAFEIPLVAKKLAQKGEYDAVITLGCVIRGATSHYDYVCNEVAKGVSKANDISDTPVIFGVLTTESIEQAVERAGTKAGNKGSEAAVSAIEMANLIK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAEQ (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ribH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.051e-35
Identity = 73/139 (52.52%), Postives = 106/139 (76.26%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V++ NIDV +VPG+FEI +VA++L + G+Y+AV+ +G V+RG T+HYD V N  A GV  A   S  P IFGVLT ++++QA+ RAG K+GNKG+EAA++AIEMA+L +
Sbjct:   12 LKIAIVVSRFNDFITTRLLEGAKDTLIRHEVEDTNIDVAYVPGAFEIPLVAKKLAQKGEYDAVITLGCVIRGATSHYDYVCNEVAKGVSKANDISDTPVIFGVLTTESIEQAVERAGTKAGNKGSEAAVSAIEMANLIK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAS1 (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ribH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.373e-35
Identity = 73/137 (53.28%), Postives = 102/137 (74.45%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            L+ A+VV+RFN+ +T  LL+GA +T  ++ V E NIDV +VPG+FEI +VA++L K   Y+AV+ +G V+RG T+HYD V N  A GV  A   +  P IFG+LT +N++QA+ RAG K+GNKGAEAA++AIEMA+L
Sbjct:   12 LKVAIVVSRFNDFITNRLLDGAKDTLIRHEVPEANIDVAYVPGAFEIPLVAKKLAKKNDYDAVITLGCVIRGSTSHYDYVCNEVAKGVSKANDVTDTPVIFGILTTENIEQAVERAGTKAGNKGAEAAVSAIEMANL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAAR (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus aureus (strain MRSA252) GN=ribH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.373e-35
Identity = 72/139 (51.80%), Postives = 104/139 (74.82%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+  +VV+RFN+ +T  LLEGA +T  ++ V E+NIDV +VPG+FEI +VA++L  SG Y+AV+ +G V+RG T+H+D V N  A GV      + VP IFG+LT ++++QA+ RAG K+GNKGAEAA++AIEMA+L +
Sbjct:   12 LKVVIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHFDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_PERMH (6,7-dimethyl-8-ribityllumazine synthase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=ribH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.373e-35
Identity = 70/141 (49.65%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL F +VV RFN+L+T  LLEGA++   ++   E+NI VV VPGSFEI ++A+++ K+GKY+AV+C+GAV+RG T H++ VA     G+    + + +P  +G+LT D ++QA+ RAG K GNKG +AAL+AIEMA+L +
Sbjct:   11 EGLNFCIVVGRFNDLITNKLLEGAIDCIVRHGGSEDNITVVRVPGSFEIPLIAKKVAKTGKYDAVICLGAVIRGSTPHFEYVAAEVTKGIALVSLETEIPVSYGILTTDTIEQAVERAGTKMGNKGFDAALSAIEMANLIK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_OCEIH (6,7-dimethyl-8-ribityllumazine synthase OS=Oceanobacillus iheyensis GN=ribH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.373e-35
Identity = 74/153 (48.37%), Postives = 102/153 (66.67%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK*WFHQEEL 689
            +G + A+V +RFNE +T  LL GA +   ++ V  ENIDV+WVPG+FEI  + ++   S KY+ V+ +G V+RG TTHYD V N  + GV   GMNS +P +FGVLT ++++QA+ RAG K+GNKGAE AL  +EM SL E      FH E +
Sbjct:   11 QGKKIAIVTSRFNEFITSKLLSGAEDMLIRHGVARENIDVIWVPGAFEIPYITKRAVHSQKYDGVITLGTVIRGATTHYDYVCNEVSKGVAQVGMNSNIPVLFGVLTTESIEQAVERAGTKAGNKGAETALGLLEMISLNEQ-----FHVESV 158          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_GEOTN (6,7-dimethyl-8-ribityllumazine synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ribH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.373e-35
Identity = 70/138 (50.72%), Postives = 105/138 (76.09%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GL+  +VV+RFNE +T  LL GA++   ++ V + +I V WVPG+FEI +VA+++ +S +++A++ +GAV+RG T+H+D V + AA GV  A + SGVP IFGVLT D ++QA+ RAG K+GNKG EAA++AIEMA++
Sbjct:   12 GLKIGIVVSRFNEFITSKLLSGAIDGLTRHGVSDNDITVTWVPGAFEIPLVAKKMAESKQFDAIITLGAVIRGATSHFDYVCSEAAKGVSHAALTSGVPVIFGVLTTDTIEQAIERAGTKAGNKGWEAAVSAIEMANV 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_GEOUR (6,7-dimethyl-8-ribityllumazine synthase OS=Geobacter uraniireducens (strain Rf4) GN=ribH PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.794e-35
Identity = 69/141 (48.94%), Postives = 104/141 (73.76%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +GLRF +VV RFN  +++ LLEGAL+   ++   ++NIDV  VPG+FEI +  +++  +G+Y+A++C+GAV+RG T H+D VA   + GV    ++SGVP  FGVLT D ++QA+ RAG K+GNKG ++A+TAIE A+LF+
Sbjct:   12 KGLRFGIVVGRFNSFISERLLEGALDALIRHGADDKNIDVARVPGAFEIPLATKKMAATGRYDAIICLGAVIRGATPHFDYVAAEVSKGVAHVSLDSGVPVAFGVLTTDTIEQAVERAGTKAGNKGFDSAVTAIETANLFK 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_PEDPA (6,7-dimethyl-8-ribityllumazine synthase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.059e-35
Identity = 68/137 (49.64%), Postives = 100/137 (72.99%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            L+ A++VARFN+LVTK LL+GA +T  +  V +E+ID+ WVPG+FEI  VAQ++ + G  + ++ +GAVVRG+T+HY++V +   SG+    +   VP +FGVL  +NM+QALNRAGGK+GNKG+E A   +EM  +
Sbjct:   13 LKIAIIVARFNDLVTKRLLDGAFQTLAQNGVSKEDIDIYWVPGAFEIPRVAQKISQKGNVDGIITLGAVVRGETSHYESVCSGVTSGIAQIALEGKVPVMFGVLMTENMEQALNRAGGKAGNKGSECATGLLEMIDI 149          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_CARHZ8.051e-3651.066,7-dimethyl-8-ribityllumazine synthase OS=Carboxy... [more]
RISB_STAES1.051e-3552.526,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAEQ1.051e-3552.526,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAS11.373e-3553.286,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAAR1.373e-3551.806,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_PERMH1.373e-3549.656,7-dimethyl-8-ribityllumazine synthase OS=Perseph... [more]
RISB_OCEIH1.373e-3548.376,7-dimethyl-8-ribityllumazine synthase OS=Oceanob... [more]
RISB_GEOTN1.373e-3550.726,7-dimethyl-8-ribityllumazine synthase OS=Geobaci... [more]
RISB_GEOUR1.794e-3548.946,7-dimethyl-8-ribityllumazine synthase OS=Geobact... [more]
RISB_PEDPA3.059e-3549.646,7-dimethyl-8-ribityllumazine synthase OS=Pedioco... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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