DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_GEOKA (6,7-dimethyl-8-ribityllumazine synthase OS=Geobacillus kaustophilus GN=ribH PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.059e-35
Identity = 71/138 (51.45%), Postives = 105/138 (76.09%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GL+  +VV+RFNE +T  LL GA++   ++ V + +I V WVPG+FEI +VA+++ +S +++AV+ +GAV+RG T+H+D V + AA GV  A + SGVP IFGVLT D ++QA+ RAG K+GNKG EAA++AIEMA++
Sbjct:   12 GLKIGIVVSRFNEFITGKLLSGAIDGLTRHGVSDSDITVAWVPGAFEIPLVAKKMAESKQFDAVITLGAVIRGATSHFDYVCSEAAKGVSHAALASGVPVIFGVLTTDTIEQAIERAGTKAGNKGWEAAVSAIEMANV 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_MACCJ (6,7-dimethyl-8-ribityllumazine synthase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.996e-35
Identity = 72/139 (51.80%), Postives = 103/139 (74.10%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            EGL+ A+V +RFN  +T  L EGA++T +++ V +E+ID+  VPG+FE+  VA +L +  KY+AV+ +G V+RG TTHYD V N AA G+  AG   G P IFGV+T ++++QA+ RAG K+GNKG EAA++AIEMA+L
Sbjct:   10 EGLKIAVVTSRFNHFITDRLTEGAIDTLERHGVVKEDIDIFLVPGAFELPFVASKLAQKKKYDAVITLGCVIRGATTHYDYVCNEAAKGIAKAG-EYGTPVIFGVVTTESIEQAIERAGTKAGNKGGEAAISAIEMANL 147          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_DEIGD (6,7-dimethyl-8-ribityllumazine synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.996e-35
Identity = 74/137 (54.01%), Postives = 102/137 (74.45%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            LRFA+V  R+N L+   L+EGA   F ++  K EN+D   VPGS E+ +VA++L ++GKY+AV+C+GAV+RGDT HY  VA  AASG+L++ +++GVP  FGVLT + ++QALNRAG K+GNKGAEA L  IE  +L
Sbjct:   13 LRFAIVSTRWNHLIVDRLVEGAELAFVQHGGKSENLDHFIVPGSHELPLVARRLAETGKYDAVVCLGAVIRGDTDHYKFVAGGAASGILNSALHTGVPIAFGVLTTETVEQALNRAGIKAGNKGAEATLAMIETVNL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_THESQ (6,7-dimethyl-8-ribityllumazine synthase OS=Thermotoga sp. (strain RQ2) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.218e-35
Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  225 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            + EGL+ A+VV RFN+LVT  LLEGAL+  K++ V +ENI VV +PGS E     ++L   G ++A++ +GAV+RG+T H++ VAN     V    M S +P +FGVLT D ++QALNRAG KSGNKG EAA+ AIEMA+L
Sbjct:    9 RGEGLKIAVVVPRFNDLVTSKLLEGALDGLKRHGVSDENITVVRIPGSMEAIYTLKRLLDLGVHDAIIVLGAVIRGETYHFNVVANEIGKAVAQFNMTSDIPIVFGVLTTDTLEQALNRAGAKSGNKGFEAAMVAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_THEMA (6,7-dimethyl-8-ribityllumazine synthase OS=Thermotoga maritima GN=ribH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.218e-35
Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  225 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            + EGL+ A+VV RFN+LVT  LLEGAL+  K++ V +ENI VV +PGS E     ++L   G ++A++ +GAV+RG+T H++ VAN     V    M S +P +FGVLT D ++QALNRAG KSGNKG EAA+ AIEMA+L
Sbjct:    9 RGEGLKIAVVVPRFNDLVTSKLLEGALDGLKRHGVSDENITVVRIPGSMEAIYTLKRLLDLGVHDAIIVLGAVIRGETYHFNVVANEIGKAVAQFNMTSDIPIVFGVLTTDTLEQALNRAGAKSGNKGFEAAMVAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_PELCD (6,7-dimethyl-8-ribityllumazine synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.218e-35
Identity = 67/141 (47.52%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EG +F ++V+RFN  +   L+EGAL+T  ++   + +ID++ VPG+FEI V AQ+   S +Y+A++C+GAV+RG T H+D V    + GV S  ++SG+P  FGV+T D+++QA+ RAG K+GNKG +AA+TAIEM +LF+
Sbjct:   12 EGFKFGIIVSRFNSFICDRLVEGALDTLVRHGAADGDIDILRVPGAFEIPVAAQKAAASKRYDALICLGAVIRGSTPHFDYVCAEVSKGVASVSLDSGMPVSFGVITTDSIEQAIERAGTKAGNKGTDAAITAIEMVNLFK 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_LEUCK (6,7-dimethyl-8-ribityllumazine synthase OS=Leuconostoc citreum (strain KM20) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.218e-35
Identity = 70/148 (47.30%), Postives = 104/148 (70.27%), Query Frame = 3
Query:  210 TGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            TG LT +E  R A+VV+RFN LVT+ LL+GA +T   + V E +I V WVPG+ EI +V+ QL +SG ++ ++ +GAV++GDT HY+ V N  A+GV    +++  P +FGVLT D ++QA  RAG K+GNKGAE  ++ +E+ SL++
Sbjct:    4 TGKLTGHEERRIAIVVSRFNALVTEPLLKGARDTLNMHGVDEHHISVFWVPGALEITMVSSQLAESGMFDGIVTLGAVIKGDTDHYNLVINGVANGVSQVSLSTNTPIVFGVLTTDTLEQAQQRAGAKAGNKGAEVTVSLLEILSLYD 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_GEOSF (6,7-dimethyl-8-ribityllumazine synthase OS=Geobacter sp. (strain FRC-32) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.218e-35
Identity = 68/141 (48.23%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +GLRF ++V RFN  + + LLEGAL+   ++   ++NI+V  VPG+FEI +  +++  +GKY+A++C+GAV+RG T H+D VA   + GV    ++SGVP  FGVLT D ++QA+ RAG K+GNKG ++A+TAIE A+LF+
Sbjct:   12 KGLRFGIIVGRFNSFIGERLLEGALDALIRHGADDKNIEVARVPGAFEIPLATKKMAATGKYDAIICLGAVIRGATPHFDYVAAEVSKGVAHVSLDSGVPVAFGVLTTDTIEQAVERAGTKAGNKGFDSAMTAIETANLFK 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_DESAA (6,7-dimethyl-8-ribityllumazine synthase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=ribH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.218e-35
Identity = 67/141 (47.52%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EG RF ++VARFN+ ++  LL GAL+   +    +ENI+V  VPG+FEI ++A ++ KSGKY+A++C+GAV+RG T H+D V   A+ G+    + +G+P +FG+LT D ++QA+ RAG K+GNKG + A+ AIEM +L E
Sbjct:   12 EGKRFGIIVARFNDFISDRLLGGALDALMRSGAADENIEVAKVPGAFEIPLIADKMAKSGKYDALICLGAVIRGSTPHFDYVCAEASKGIAHVSLGAGIPVMFGILTTDTIEQAIERAGTKAGNKGWDVAMGAIEMVNLAE 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_THEGJ (6,7-dimethyl-8-ribityllumazine synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=ribH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.815e-35
Identity = 80/145 (55.17%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  213 GFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GF+ K  GLR  +VVARFN+L+T  LL+GAL+ F+++ V+E  +DVV VPGSFEI +VA+++ +SG+Y+AVL +GAVVRG+T H+D VAN  A GV +  +++GVP IFGV+T ++  Q  NRAG KS NKG E A+ A+EMA L
Sbjct:    9 GFIGK--GLRMGVVVARFNDLLTGELLKGALDCFERHGVEE--VDVVKVPGSFEIPLVAKKMAESGRYDAVLALGAVVRGETKHFDLVANEVAKGVANVSLDTGVPVIFGVITVEDELQGFNRAGVKS-NKGFEYAMAALEMADL 148          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_GEOKA3.059e-3551.456,7-dimethyl-8-ribityllumazine synthase OS=Geobaci... [more]
RISB_MACCJ3.996e-3551.806,7-dimethyl-8-ribityllumazine synthase OS=Macroco... [more]
RISB_DEIGD3.996e-3554.016,7-dimethyl-8-ribityllumazine synthase OS=Deinoco... [more]
RISB_THESQ5.218e-3552.486,7-dimethyl-8-ribityllumazine synthase OS=Thermot... [more]
RISB_THEMA5.218e-3552.486,7-dimethyl-8-ribityllumazine synthase OS=Thermot... [more]
RISB_PELCD5.218e-3547.526,7-dimethyl-8-ribityllumazine synthase OS=Pelobac... [more]
RISB_LEUCK5.218e-3547.306,7-dimethyl-8-ribityllumazine synthase OS=Leucono... [more]
RISB_GEOSF5.218e-3548.236,7-dimethyl-8-ribityllumazine synthase OS=Geobact... [more]
RISB_DESAA5.218e-3547.526,7-dimethyl-8-ribityllumazine synthase OS=Desulfa... [more]
RISB_THEGJ6.815e-3555.176,7-dimethyl-8-ribityllumazine synthase OS=Thermoc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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