DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STACT (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus carnosus (strain TM300) GN=ribH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.815e-35
Identity = 70/141 (49.65%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            + L+  +VV+RFN+ +T  LL+GA +   ++ V+ E IDV +VPG+FEI + A++L ++GKY+AV+ +G V+RG T+HYD V N  A GV      +G+P IFGVLT + ++QA+ RAG K+GNKGAEAA+ AIEMA+L +
Sbjct:   10 QDLKIGIVVSRFNDFITGRLLDGAKDVLVRHEVESEKIDVAFVPGAFEIPLAAKKLAETGKYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVSDTTGLPVIFGVLTTETIEQAVERAGTKAGNKGAEAAMAAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACSU (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus subtilis GN=ribH PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 6.815e-35
Identity = 67/138 (48.55%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GL+  +VV RFN+ +T  LL GA +   ++ V   +IDV WVPG+FEI   A+++ ++ KY+A++ +G V+RG TTHYD V N AA G+  A   +GVP IFG++T +N++QA+ RAG K+GNKG + A++AIEMA+L
Sbjct:   12 GLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ACIAD (6,7-dimethyl-8-ribityllumazine synthase OS=Acinetobacter sp. (strain ADP1) GN=ribH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.815e-35
Identity = 71/153 (46.41%), Postives = 108/153 (70.59%), Query Frame = 3
Query:  195 AVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            A+R + G L      R+A++V RFN  V + LLEGA++T K++ V E+NI V + PG++E+ +VA++L  S K++A++ +GAV+RG T H+D VA   A G+    + S +P I GVLT D+++QA+ R+G K+GNKG+EAALTAIEM +L +
Sbjct:    2 AIRRIEGLLHLASEGRYAILVGRFNSFVVEHLLEGAIDTLKRHGVSEDNITVAYAPGAWELPIVAKKLAASDKFDAIIALGAVIRGSTPHFDFVAGECAKGLGVVALESSLPVINGVLTTDSIEQAIERSGTKAGNKGSEAALTAIEMVNLLK 154          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_GEOSL (6,7-dimethyl-8-ribityllumazine synthase OS=Geobacter sulfurreducens GN=ribH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 8.901e-35
Identity = 70/139 (50.36%), Postives = 101/139 (72.66%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLF 650
            GLRF ++V+RFN  + + LLEGAL+   ++   + +IDVV VPG+FEI + AQ+L + G Y+AV+C+GAV+RG T H+D VA   + G+    + +GVP +FGVLT D ++QA+ RAG K+GNKG +AA+TAIE A L+
Sbjct:   13 GLRFGIIVSRFNSFIGERLLEGALDALVRHGGDDGDIDVVRVPGAFEIPLTAQKLVQKGNYDAVICLGAVIRGSTPHFDYVAAEVSKGIAHVSLATGVPVVFGVLTTDTIEQAIERAGTKAGNKGFDAAVTAIETARLY 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_DESRM (6,7-dimethyl-8-ribityllumazine synthase OS=Desulfotomaculum reducens (strain MI-1) GN=ribH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 8.901e-35
Identity = 70/150 (46.67%), Postives = 107/150 (71.33%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            HL G     + L+F +VV RFNE +T  LL GAL+  K++ V++EN+++ +VPG++EI +VA+++  S +Y+ V+C+GAV+RG T H++ V+   + GV    ++S +P IFGVLT D ++QA+ RAG K+GNKG EAA  AIEMA+L +
Sbjct:    8 HLLG-----QELKFGIVVGRFNEFITNKLLSGALDALKRHGVEDENVEIAYVPGAYEIPLVAKKMADSKRYDGVICLGAVIRGATPHFEYVSAEVSKGVAKISLDSNLPVIFGVLTVDTIEQAIERAGTKAGNKGWEAANAAIEMANLLK 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_PELLD (6,7-dimethyl-8-ribityllumazine synthase OS=Pelodictyon luteolum (strain DSM 273) GN=ribH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.163e-34
Identity = 67/153 (43.79%), Postives = 110/153 (71.90%), Query Frame = 3
Query:  198 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            ++ + G L+  +  RFALV++RFN+ + + L+EGA++  +++   E+NI +   PG+FE+ +VA++   +GKY+A++ +GA++RG T H+D VA  A  G+  A + +GVP  FGVLT +N++QA+ RAG K+GNKG +AALTAIEM +L+ +
Sbjct:    3 IKQIEGALSAKDA-RFALVISRFNDFIGQKLMEGAIDCIRRHGGSEDNITIYRCPGAFELPMVAKKAALTGKYDALITLGAIIRGSTPHFDVVAAEATKGIAQASLETGVPIAFGVLTTENIEQAIERAGTKAGNKGFDAALTAIEMVNLYRN 154          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_GEOBB (6,7-dimethyl-8-ribityllumazine synthase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ribH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.163e-34
Identity = 68/141 (48.23%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGLRF +VV RFN  + + LLEGAL+   ++   +  I VV VPG+FEI + AQ++  SG Y+A++C+GAV+RG T H+D V++  + G+    + +GVP  FGVLT D ++QA+ RAG K+GNKG +AA+T IE+A++F+
Sbjct:   12 EGLRFGIVVGRFNSFIGERLLEGALDALLRHGANDAQITVVRVPGAFEIPLTAQKMAGSGNYDALICLGAVIRGSTPHFDYVSSEVSKGIAHVSLATGVPVAFGVLTTDTIEQAIERAGTKAGNKGFDAAMTVIEIANVFK 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACSK (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus clausii (strain KSM-K16) GN=ribH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.163e-34
Identity = 71/138 (51.45%), Postives = 97/138 (70.29%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GL+  +VV RFNE +T  LL GA +   ++   E +IDV WVPG+FEI   A+++ +SG+Y+AV+ +G V+RG T H+D V N  A GV S  + +G+P IFGVLT D ++QA+ RAG K+GNKG EAA  AIEMA+L
Sbjct:   13 GLKVGIVVGRFNEFITSKLLGGAQDGLIRHGADEGDIDVAWVPGAFEIPFAAKKMAESGRYDAVITLGTVIRGSTPHFDYVCNEVAKGVSSLALTTGIPVIFGVLTTDTIEQAVERAGTKAGNKGWEAASAAIEMANL 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_THEON (6,7-dimethyl-8-ribityllumazine synthase OS=Thermococcus onnurineus (strain NA1) GN=ribH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.518e-34
Identity = 76/143 (53.15%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  225 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            K +GL  A+VVARFN+L+T  LL GA++ F+++ V  E +DV  VPGSFEI ++A++L +SGKY+A+L +G VVRG+T H+D VAN  + GV  AG+ +GVP IFGV+  ++  Q LNRAG KS NKG E A+ A+EMA+L +
Sbjct:   11 KGDGLSMAIVVARFNDLLTDELLSGAIDCFERHGV--ERVDVFKVPGSFEIPIIAKKLAESGKYDAILALGVVVRGETKHFDLVANEVSKGVAQAGLITGVPVIFGVIAVEDELQGLNRAGIKS-NKGFEYAMAALEMANLMK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STRA5 (6,7-dimethyl-8-ribityllumazine synthase OS=Streptococcus agalactiae serotype V GN=ribH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.518e-34
Identity = 70/147 (47.62%), Postives = 102/147 (69.39%), Query Frame = 3
Query:  207 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            + G L  NE ++  +VV+RFNEL+T  LL GA++   ++ V EE+ID+VWVPG+FEI  +A+++     Y+A++C+G V++G T HYD V N    G+      S +P IFGVLT DN++QA+ RAG K+GNKG + AL+AIEM +L
Sbjct:    4 IEGQLVANE-MKIGIVVSRFNELITSKLLSGAVDGLLRHGVSEEDIDIVWVPGAFEIPYMARKMALYKDYDAIICLGVVIKGSTDHYDYVCNEVTKGIGHLNSQSDIPHIFGVLTTDNIEQAIERAGTKAGNKGYDCALSAIEMVNL 149          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_STACT6.815e-3549.656,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_BACSU6.815e-3548.556,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_ACIAD6.815e-3546.416,7-dimethyl-8-ribityllumazine synthase OS=Acineto... [more]
RISB_GEOSL8.901e-3550.366,7-dimethyl-8-ribityllumazine synthase OS=Geobact... [more]
RISB_DESRM8.901e-3546.676,7-dimethyl-8-ribityllumazine synthase OS=Desulfo... [more]
RISB_PELLD1.163e-3443.796,7-dimethyl-8-ribityllumazine synthase OS=Pelodic... [more]
RISB_GEOBB1.163e-3448.236,7-dimethyl-8-ribityllumazine synthase OS=Geobact... [more]
RISB_BACSK1.163e-3451.456,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_THEON1.518e-3453.156,7-dimethyl-8-ribityllumazine synthase OS=Thermoc... [more]
RISB_STRA51.518e-3447.626,7-dimethyl-8-ribityllumazine synthase OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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