DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_DEHE1 (6,7-dimethyl-8-ribityllumazine synthase OS=Dehalococcoides ethenogenes (strain 195) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.861e-38
Identity = 71/142 (50.00%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            +GL+ ALVV+RFNE +T  LL GA ++ +++ V  +N DV WVPG+FEI +VAQ+L KSG+Y+AV+C+GAV+RG T H++ V++  + G+   G+++ +P IFGV+T D+++QA+ RAG K GNKG +AA  AIE+A+L ++
Sbjct:   12 QGLKVALVVSRFNEFITSKLLSGAKDSLERHGVSADNTDVAWVPGAFEIPLVAQKLAKSGRYDAVICLGAVIRGSTPHFEYVSSEVSKGIARVGLDASLPVIFGVITADSIEQAIERAGTKMGNKGFDAATQAIEVANLMKN 153          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BIFLI (6,7-dimethyl-8-ribityllumazine synthase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.861e-38
Identity = 71/139 (51.08%), Postives = 105/139 (75.54%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            E +   +VVARFNE +T  LL GAL+T K+ +V+E++I V WVPG+FEI ++A ++ KS +Y+A++C+GAV+RG T+HYD V N  + G+    +++GVP +FGVLT D+++QA+ RAG K+GNKG+E A  AIEM +L
Sbjct:   11 ENITIGIVVARFNEFITSKLLAGALDTLKRENVREQDIAVAWVPGAFEIPLIASRMAKSKRYDAIICLGAVIRGSTSHYDYVCNEVSKGIAQTSLDTGVPVLFGVLTTDSIEQAIERAGTKAGNKGSECAQGAIEMVNL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOK5 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 71/139 (51.08%), Postives = 103/139 (74.10%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            EGL+F +VV RFNE +   LL GAL+  K++  +E+NID+ WVPG+FEI ++++++  S KY+AV+C+GAV+RG T H+D V++  + GV    + S +P IF VLT DN++QA+ RAG KSGNKG + A+ AIEMA+L
Sbjct:   11 EGLKFGIVVGRFNEFIVSKLLSGALDCLKRHGAEEDNIDITWVPGAFEIPMISKKMAFSRKYDAVICLGAVIRGSTPHFDYVSSEVSKGVAHVSLESDIPVIFSVLTTDNIEQAIERAGTKSGNKGYDGAMAAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOK1 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 71/139 (51.08%), Postives = 103/139 (74.10%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            EGL+F +VV RFNE +   LL GAL+  K++  +E+NID+ WVPG+FEI ++++++  S KY+AV+C+GAV+RG T H+D V++  + GV    + S +P IF VLT DN++QA+ RAG KSGNKG + A+ AIEMA+L
Sbjct:   11 EGLKFGIVVGRFNEFIVSKLLSGALDCLKRHGAEEDNIDITWVPGAFEIPMISKKMAFSRKYDAVICLGAVIRGSTPHFDYVSSEVSKGVAHVSLESDIPVIFSVLTTDNIEQAIERAGTKSGNKGYDGAMAAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOBM (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 70/141 (49.65%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V+RFNE +T  LL G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY+AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   11 EGLKVGIIVSRFNEFITSKLLAGSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOBL (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 70/141 (49.65%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V+RFNE +T  LL G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY+AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   11 EGLKVGIIVSRFNEFITSKLLAGSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOBK (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Okra / Type B1) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 70/141 (49.65%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V+RFNE +T  LL G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY+AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   11 EGLKVGIIVSRFNEFITSKLLAGSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOBJ (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 70/141 (49.65%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V+RFNE +T  LL G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY+AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   11 EGLKVGIIVSRFNEFITSKLLAGSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOBH (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 70/141 (49.65%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V+RFNE +T  LL G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY+AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   11 EGLKVGIIVSRFNEFITSKLLAGSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOB1 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=ribH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.043e-38
Identity = 70/141 (49.65%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V+RFNE +T  LL G+++  K++  KE+NI+V WVPG+FEI V+A+++   GKY+AV+C+GAV+RG T H+D V++  + GV    ++  VP IFGVLT D ++QA+ RAG K+GNKG +AA++AIEM++L +
Sbjct:   11 EGLKVGIIVSRFNEFITSKLLAGSIDCLKRHGAKEDNIEVCWVPGAFEIPVIAKKMASKGKYDAVICLGAVIRGATPHFDYVSSEVSKGVAHVSLDKEVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAMSAIEMSNLMK 151          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_DEHE13.861e-3850.006,7-dimethyl-8-ribityllumazine synthase OS=Dehaloc... [more]
RISB_BIFLI3.861e-3851.086,7-dimethyl-8-ribityllumazine synthase OS=Bifidob... [more]
RISB_CLOK55.043e-3851.086,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOK15.043e-3851.086,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBM5.043e-3849.656,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBL5.043e-3849.656,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBK5.043e-3849.656,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBJ5.043e-3849.656,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBH5.043e-3849.656,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOB15.043e-3849.656,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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