DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_METFK (6,7-dimethyl-8-ribityllumazine synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=ribH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.203e-17
Identity = 45/139 (32.37%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            LR  +V++RFN  + + LL+  ++   K  V +++I +  VPG+ E   +  Q+  S +++ ++ +GAV+RG+T H++ V+N +A G+    +++G+P    +LT +N +QA  R       KGAEAA   +EM +L +
Sbjct:   13 LRIGIVLSRFNSNIGEGLLKACVDQLHKLGVADDDITLATVPGALEAPAILLQMADSEQFDGLIALGAVIRGETYHFEVVSNESARGISDVQLSTGIPIANAILTTENDEQAEARV----AVKGAEAADVVVEMINLLK 147          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_KOCRD (6,7-dimethyl-8-ribityllumazine synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=ribH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.203e-17
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAIEMA 641
            LR A+V A ++  +   LL+GA         +  ++  V VPGSFE+ V A +L  +G  +AV+ +G VVRG T H+D V ++A SG+    + +G P  FG+LTCD  +Q L+RAG  G   +KG EAA  A+  A
Sbjct:   19 LRVAVVAASWHTTIMDGLLDGARRALA--DARAGHVVQVRVPGSFELPVAASRL--AGDVDAVVALGVVVRGGTPHFDYVCHAATSGLTEVSVRTGTPVGFGLLTCDTEEQGLDRAGLEGSHEDKGYEAAHAALSTA 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_NOCSJ (6,7-dimethyl-8-ribityllumazine synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ribH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.757e-17
Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAI 632
            LR A+V A ++  V   L+ GA      Y V E  +  V VPG+FE+ VVA  L +   Y+ V+ +G V+RG T H+D V  +   G++   ++  +P  FGVLTCD   QAL+RAG  G   +KG EA   A+
Sbjct:   17 LRVAVVAASWHTQVMDGLIAGAQRALADYHVAEHRL--VRVPGAFELAVVADALARQ-HYDVVVALGVVIRGGTPHFDYVCQAVTEGLVRVALDRSLPVGFGVLTCDGDQQALDRAGLEGSKEDKGYEATSAAL 147          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLAM3 (6,7-dimethyl-8-ribityllumazine synthase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ribH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.093e-16
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAIEMASLFE 653
            GLR  +V  R+++ ++  LL GA        V      V+ VPGSFE+ VVA+    +G  +AV+ +G ++RG T H++ V+++A SG+  A + +G P  FG+LT D+  Q ++RAG  G   +KGAEAA  A+  A L +
Sbjct:   18 GLRVTVVAGRWHDEISAGLLAGARRVLDAAGV---TTTVIRVPGSFELPVVARAALDAGA-DAVVALGVIIRGGTPHFEYVSDAATSGLTQASLLAGKPIGFGLLTLDDEQQGIDRAGLPGSKEDKGAEAAEAAVTTALLLK 155          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CHLPN (6,7-dimethyl-8-ribityllumazine synthase OS=Chlamydia pneumoniae GN=ribH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.428e-16
Identity = 47/152 (30.92%), Postives = 85/152 (55.92%), Query Frame = 3
Query:  198 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLF 650
            ++ L G L+  + LR A+V + FN+ +   L+ G  ETF K+   E+ +  + VPG+FEI   + + L    K++A++  G +++G+T HY+ + N  A+G+ +  +   +P    ++   + + A  R+G K  + G     TAIEMA+LF
Sbjct:    1 MKTLKGHLSA-KNLRIAIVGSCFNQAMADALVSGTQETFLKFGGSEDGLMTIRVPGAFEIPCTIKKLLSSERKFDAIVACGVLIQGETDHYNQIVNQVAAGIGALSLEFCLPITLSIVAAPSAEIAWQRSGIKGRHLGVSGMTTAIEMATLF 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_RHOBA (6,7-dimethyl-8-ribityllumazine synthase OS=Rhodopirellula baltica GN=ribH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.865e-16
Identity = 41/136 (30.15%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  240 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            R A++ +R+N  +   +++ AL++     + E+   ++ VPG++E+    +Q  +       + +G V++G+TTH + +  + +  ++   + SG P  FG+LTC+ ++QA+ R+GG  GNKG EAA   +EM  L
Sbjct:   15 RVAIIASRYNANICDSMVQAALQSLSDAGIPEDKQWLIRVPGAWELCWAVEQAFQHADVIGAITLGCVIKGETTHDEHINRAVSDTLMEQAVRSGRPVGFGLLTCNTVEQAIQRSGGAVGNKGHEAADAMLEMLRL 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_POLNA (6,7-dimethyl-8-ribityllumazine synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=ribH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.865e-16
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            L   +V ARFNE +T  L E  L       V  +NI  + VPG+ E+    Q L +S  ++A++ +G ++RG+T H++ VAN + S V    ++  +P    +LT +N+ QA  R       KG +AA  A+EMA+L
Sbjct:   17 LSIGIVQARFNEGITNALAEACLRELAALGVDAKNITHLKVPGALEVPCALQALAESENFDALIALGCIIRGETYHFELVANESGSAVTRLALDYQLPIANAILTVENLAQAQAR----QEEKGRDAARVAVEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_SACEN (6,7-dimethyl-8-ribityllumazine synthase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=ribH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.435e-16
Identity = 54/137 (39.42%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAIEMA 641
            LR  +   R++  +T  LLE AL    +  V E    VV VPGS E+ VV QQL    +++AV+ +G V+RG T H++ V +S  +G+    ++   P   GVLTCD  +QAL RAG    + +KG EA   A+E A
Sbjct:   17 LRLGIAAIRWHAKITDRLLERALAAASEAGVAEPT--VVRVPGSIELPVVCQQLAH--QHDAVVALGVVIRGGTPHFEYVCDSVTAGLTRVSLDESTPVGNGVLTCDTEEQALARAGFEDSAEDKGFEATAAALETA 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_PROAC (6,7-dimethyl-8-ribityllumazine synthase OS=Propionibacterium acnes GN=ribH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.181e-16
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAI 632
            GL+ A+V A+++  V   LL+GAL       V +    V+ VPGSFE+ V    L  +  ++A++ +G ++RG T H+D V ++A  G+    + +  P  FG+LTCD+  QAL+RAG  G   +KG EAA  AI
Sbjct:   21 GLKVAVVAAQWHGTVMTGLLDGALRGLVDSGVHDPA--VIRVPGSFELPVACASL--ADHFDALVALGVIIRGGTPHFDYVCDAATRGITDVAVRTKTPIGFGILTCDDEAQALDRAGLEGSHEDKGYEAAQAAI 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_MYCSS (6,7-dimethyl-8-ribityllumazine synthase OS=Mycobacterium sp. (strain MCS) GN=ribH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.254e-16
Identity = 50/138 (36.23%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAIEMA 641
            G++  +V + ++  +   LL+GAL+  +  +V E    VV V G+ EI VVAQ L  +  + AV+ +G V+RG T H+D V ++   G+    +++  P   GVLT +  +QAL+RAG  G + +KGA+AA  A+  A
Sbjct:   17 GMKVGIVASTWHSTICDALLDGALKVTESANVSEPT--VVRVLGAIEIPVVAQAL--AADHEAVIALGVVIRGQTPHFDYVCDAVTQGLTRVSLDASTPVANGVLTTNTEEQALDRAGLPGSAEDKGAQAAAAALSTA 150          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_METFK2.203e-1732.376,7-dimethyl-8-ribityllumazine synthase OS=Methylo... [more]
RISB_KOCRD2.203e-1740.156,7-dimethyl-8-ribityllumazine synthase OS=Kocuria... [more]
RISB_NOCSJ3.757e-1739.556,7-dimethyl-8-ribityllumazine synthase OS=Nocardi... [more]
RISB_CLAM31.093e-1638.036,7-dimethyl-8-ribityllumazine synthase OS=Claviba... [more]
RISB_CHLPN1.428e-1630.926,7-dimethyl-8-ribityllumazine synthase OS=Chlamyd... [more]
RISB_RHOBA1.865e-1630.156,7-dimethyl-8-ribityllumazine synthase OS=Rhodopi... [more]
RISB_POLNA1.865e-1635.046,7-dimethyl-8-ribityllumazine synthase OS=Polarom... [more]
RISB_SACEN2.435e-1639.426,7-dimethyl-8-ribityllumazine synthase OS=Sacchar... [more]
RISB_PROAC3.181e-1638.526,7-dimethyl-8-ribityllumazine synthase OS=Propion... [more]
RISB_MYCSS9.254e-1636.236,7-dimethyl-8-ribityllumazine synthase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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