DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_LACLM (6,7-dimethyl-8-ribityllumazine synthase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ribH PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.575e-37
Identity = 67/136 (49.26%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  240 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            ++ +VVARFNE +   LL GAL+  K++ V+EE ID+ WVPG+FEI ++AQ++  S KY+A++C+G V+RG T+HYD V +  + G+    +NS +P +FGVLT +N++QA+ R+G K+GNKG E A+ AIEM  L
Sbjct:   14 KYGIVVARFNEFINAKLLAGALDALKRHGVQEEQIDIAWVPGAFEIPLIAQKMASSDKYDAIICLGTVIRGSTSHYDFVCSEVSKGIAHVSLNSNIPVMFGVLTTENIEQAIERSGTKAGNKGFEVAVGAIEMVDL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOTH (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=ribH PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.575e-37
Identity = 70/140 (50.00%), Postives = 104/140 (74.29%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            GL+F +VVARFNE ++  LL G ++   ++   EE+I++ WVPG+FEI +VAQ++  S K++A++CIGAV+RG T H+D VAN  + G+    +++G+P  FGVLT D ++QA+ RAG K GNKG +AA+TAIEMA+L +
Sbjct:   14 GLKFGVVVARFNEFISSKLLGGVIDGLIRHGASEEDIEISWVPGAFEIPLVAQKMANSKKFDAIICIGAVIRGSTPHFDYVANEMSKGIAKVSLDTGIPIAFGVLTTDTIEQAIERAGTKVGNKGYDAAVTAIEMANLLK 153          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOBA (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=ribH PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.575e-37
Identity = 69/141 (48.94%), Postives = 106/141 (75.18%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+  ++V RFNE +   LL+GAL+  K++ V  E+IDV WVPG+FE+ ++A+++ KS KY+AV+C+GAV++G T+HYD V +  + G+ +  + +G P +FGVLT +N++QA+ RAG K+GNKG E A+ AIEMA+L +
Sbjct:   11 EGLKVGIIVGRFNEFIGSKLLDGALDGLKRHGVNLEDIDVAWVPGAFEMPLIAKKMAKSPKYDAVICLGAVIKGSTSHYDYVCSEVSKGIANVSLETGKPVMFGVLTTNNIEQAIERAGTKAGNKGYECAVGAIEMANLIK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_METLZ (6,7-dimethyl-8-ribityllumazine synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=ribH PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.282e-37
Identity = 65/140 (46.43%), Postives = 104/140 (74.29%), Query Frame = 3
Query:  228 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            ++ ++  +V ARFNE +   LL GAL+  K++ V ++++++ WVPG+FEI ++A+++ +S KY+AV+C+GAV+RG T+HYD V N    G+ +  + SG+P +FGVLT DN++QA+ RAG K GNKG +AA+ AIEM ++
Sbjct:   10 SKNIKIGIVAARFNEFIVSKLLGGALDALKRHDVADDDVEIAWVPGAFEIPLIAEKMAESKKYDAVICLGAVIRGSTSHYDYVCNEVTKGIATVSLKSGIPVMFGVLTTDNLEQAIERAGSKVGNKGFDAAVGAIEMVNV 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACCQ (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain Q1) GN=ribH PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.282e-37
Identity = 73/137 (53.28%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            L+  +VV RFNE +T  LL GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY+AV+ +G V+RG TTHYD V N  A GV S  + + +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:   12 LKVGVVVGRFNEFITSKLLGGALDGLKRHGVEEADIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACC7 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus cereus (strain AH187) GN=ribH PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.282e-37
Identity = 73/137 (53.28%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            L+  +VV RFNE +T  LL GAL+  K++ V+E +IDV WVPG+FEI ++A+++  SGKY+AV+ +G V+RG TTHYD V N  A GV S  + + +P IFGVLT + ++QA+ RAG K+GNKG E+A+ AIEMA L
Sbjct:   12 LKVGVVVGRFNEFITSKLLGGALDGLKRHGVEEADIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_UNCTG (6,7-dimethyl-8-ribityllumazine synthase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ribH PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.510e-37
Identity = 73/148 (49.32%), Postives = 110/148 (74.32%), Query Frame = 3
Query:  207 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLF 650
            +TG L  + G +FA+VV+RFNE +T  L+ GA +  K++SV +E+I V WVPG+FEI  VA+++ ++GK N V+C+G V+RG T H+D ++   + GV S  + S VP IFGVLT D+++QA+ RAG K+GNKG++AA++AIEM +L+
Sbjct:    4 VTGQLNAH-GKKFAIVVSRFNEFITNKLISGAEDILKRHSVADEDISVYWVPGAFEIPAVAKKIAENGKDNGVICLGCVIRGATPHFDYISAEVSKGVASIALQSNVPVIFGVLTTDSIEQAVERAGTKAGNKGSDAAMSAIEMVNLY 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_DESAP (6,7-dimethyl-8-ribityllumazine synthase OS=Desulforudis audaxviator (strain MP104C) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.510e-37
Identity = 75/148 (50.68%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            HL G     EGLRF +VVARFNE +T  LL GA +   ++ V E +I+V WVPG+FEI +VA+++    +Y+AVLC+G V+RG T H++ VA+  A GV   G+ +G P IFGV+T D ++QA+ RAG K+GNKG +AA++ IEMA+L
Sbjct:    8 HLIG-----EGLRFGIVVARFNEFITHKLLSGAQDALIRHGVAENDIEVAWVPGAFEIPLVARRMLARNRYDAVLCLGTVIRGGTPHFEYVASEVAKGVAKVGLETGTPVIFGVITADTIEQAIERAGTKAGNKGWQAAVSGIEMANL 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BRAHW (6,7-dimethyl-8-ribityllumazine synthase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.510e-37
Identity = 68/145 (46.90%), Postives = 105/145 (72.41%), Query Frame = 3
Query:  213 GFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            G L   + ++  +V ARFNE +   LL GAL+   ++++K+++I V WVPG+FEI ++A ++ KS KY+AV+C+GAV+RG TTHYD V    + G+ +  +NS +P +FGVLT +N++QA+ RAG K+GNKG ++A+ AIEM +L
Sbjct:    6 GKLVSEKPIKIGIVCARFNEFIVSKLLGGALDALSRHNIKDDDITVAWVPGAFEIPLIASKMAKSKKYDAVVCLGAVIRGSTTHYDYVCAEVSKGIANVSLNSDIPVMFGVLTTENIEQAIERAGTKAGNKGFDSAMAAIEMVNL 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ANATD (6,7-dimethyl-8-ribityllumazine synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.510e-37
Identity = 70/140 (50.00%), Postives = 105/140 (75.00%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 656
            L+FA+V++RFN  +T  LL+G L+  K++ V  ENIDV +VPG+FEI +V ++L KS KYNA++ +GAV+RG T H++ V+   + G+ +  +   VP IFGVLTCD +DQA+ RAG K+GNKG +AA++A+EMA+L ++
Sbjct:   13 LKFAIVISRFNSFITDELLKGCLDGLKRHEVDSENIDVYYVPGAFEIPLVCKKLAKSKKYNAIIALGAVIRGSTPHFEYVSAEVSKGIANVSLEQEVPVIFGVLTCDTVDQAIERAGTKAGNKGFDAAMSALEMANLMKN 152          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_LACLM5.575e-3749.266,7-dimethyl-8-ribityllumazine synthase OS=Lactoco... [more]
RISB_CLOTH5.575e-3750.006,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOBA5.575e-3748.946,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_METLZ7.282e-3746.436,7-dimethyl-8-ribityllumazine synthase OS=Methano... [more]
RISB_BACCQ7.282e-3753.286,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_BACC77.282e-3753.286,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_UNCTG9.510e-3749.326,7-dimethyl-8-ribityllumazine synthase OS=Uncultu... [more]
RISB_DESAP9.510e-3750.686,7-dimethyl-8-ribityllumazine synthase OS=Desulfo... [more]
RISB_BRAHW9.510e-3746.906,7-dimethyl-8-ribityllumazine synthase OS=Brachys... [more]
RISB_ANATD9.510e-3750.006,7-dimethyl-8-ribityllumazine synthase OS=Anaeroc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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