DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_MOOTA (6,7-dimethyl-8-ribityllumazine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.242e-36
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = 3
Query:  225 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +  GL+F +VV+RFNE +T  LL+GAL+   ++      ID+ WVPG+FEI + AQ++   G Y+AV+C+GAV+RG T H++ VA     G+    +NSGVP I+G++T DN++QA+ RAG K+GNKG +AA+TA+EMA+LF+
Sbjct:   10 EGRGLKFGIVVSRFNEFITSRLLDGALDALNRHGADPGAIDIAWVPGAFEIPLTAQKMAARG-YDAVICLGAVIRGATPHFEYVAAEVTKGIAQVSLNSGVPVIYGLITADNIEQAIERAGTKAGNKGFDAAMTAMEMANLFK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACA2 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.242e-36
Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GL+  +VV RFNE +T  LL GA +T  ++ V+  +IDV WVPG+FEI   A+++ ++ KY+AV+ +G V+RG TTHYD V N AA G+  AG  +GVP IFG++T + ++QA+ RAG K+GNKGA+ A++AIEMA+L
Sbjct:   12 GLKIGIVVGRFNEFITSKLLSGAEDTLLRHGVESNDIDVAWVPGAFEIPFAAKKMAETKKYDAVITLGTVIRGATTHYDYVCNEAAKGIAQAGTATGVPVIFGIVTTETIEQAIERAGTKAGNKGADCAVSAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_SULSY (6,7-dimethyl-8-ribityllumazine synthase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 71/141 (50.35%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            EGL+F +VV RFN  +T+ LLEGA++   ++   +ENI++V VPGSFEI + A++L KSGKY+AV+C+GAV+RG T H+D VAN    G+    + + VP  +G+LT D ++QA+ RAG K GNKG +AA+ AIEMA++ +
Sbjct:   11 EGLKFGIVVGRFNSFITERLLEGAIDCILRHGGSKENIEIVKVPGSFEIPLTAKKLAKSGKYDAVICLGAVIRGSTPHFDYVANEVTKGIAQVSLETEVPIGYGILTTDTIEQAVERAGTKMGNKGFDAAMVAIEMANVLK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAAT (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 74/139 (53.24%), Postives = 105/139 (75.54%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V E+NIDV +VPG+FEI +VA++L  SG Y+AV+ +G V+RG T+HYD V N  A GV      + VP IFG+LT ++++QA+ RAG K+GNKGAEAA++AIEMA+L +
Sbjct:   12 LKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAAE (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus aureus (strain Newman) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 74/139 (53.24%), Postives = 105/139 (75.54%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V E+NIDV +VPG+FEI +VA++L  SG Y+AV+ +G V+RG T+HYD V N  A GV      + VP IFG+LT ++++QA+ RAG K+GNKGAEAA++AIEMA+L +
Sbjct:   12 LKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAAC (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus aureus (strain COL) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 74/139 (53.24%), Postives = 105/139 (75.54%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V E+NIDV +VPG+FEI +VA++L  SG Y+AV+ +G V+RG T+HYD V N  A GV      + VP IFG+LT ++++QA+ RAG K+GNKGAEAA++AIEMA+L +
Sbjct:   12 LKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAAB (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 74/139 (53.24%), Postives = 105/139 (75.54%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V E+NIDV +VPG+FEI +VA++L  SG Y+AV+ +G V+RG T+HYD V N  A GV      + VP IFG+LT ++++QA+ RAG K+GNKGAEAA++AIEMA+L +
Sbjct:   12 LKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAA8 (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus aureus (strain NCTC 8325) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 74/139 (53.24%), Postives = 105/139 (75.54%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V E+NIDV +VPG+FEI +VA++L  SG Y+AV+ +G V+RG T+HYD V N  A GV      + VP IFG+LT ++++QA+ RAG K+GNKGAEAA++AIEMA+L +
Sbjct:   12 LKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_STAA3 (6,7-dimethyl-8-ribityllumazine synthase OS=Staphylococcus aureus (strain USA300) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 74/139 (53.24%), Postives = 105/139 (75.54%), Query Frame = 3
Query:  237 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            L+ A+VV+RFN+ +T  LLEGA +T  ++ V E+NIDV +VPG+FEI +VA++L  SG Y+AV+ +G V+RG T+HYD V N  A GV      + VP IFG+LT ++++QA+ RAG K+GNKGAEAA++AIEMA+L +
Sbjct:   12 LKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLK 150          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_SALRD (6,7-dimethyl-8-ribityllumazine synthase OS=Salinibacter ruber (strain DSM 13855) GN=ribH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.622e-36
Identity = 79/148 (53.38%), Postives = 107/148 (72.30%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            HL G L   +G RFALVV RFNE VT+ LL GAL+T +++    + + VV VPGS+EI V AQ+  ++G Y+AV+C+GAVVRG+T H+D V + A SG +   +++ VP +FG+LT D +DQA+ RAG K+GNKG EAA  AIEMA+L
Sbjct:    4 HLEGDLVV-DGHRFALVVGRFNEHVTEDLLGGALDTLERHGADLDEVTVVHVPGSWEIPVAAQKCARTGDYDAVICLGAVVRGETPHFDYVCSGATSGTMQTSLDTEVPVLFGILTTDTVDQAIARAGSKAGNKGREAAEAAIEMATL 150          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_MOOTA1.242e-3648.956,7-dimethyl-8-ribityllumazine synthase OS=Moorell... [more]
RISB_BACA21.242e-3651.456,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_SULSY1.622e-3650.356,7-dimethyl-8-ribityllumazine synthase OS=Sulfuri... [more]
RISB_STAAT1.622e-3653.246,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAAE1.622e-3653.246,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAAC1.622e-3653.246,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAAB1.622e-3653.246,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAA81.622e-3653.246,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_STAA31.622e-3653.246,7-dimethyl-8-ribityllumazine synthase OS=Staphyl... [more]
RISB_SALRD1.622e-3653.386,7-dimethyl-8-ribityllumazine synthase OS=Salinib... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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