DY258673

Overview
NameDY258673
Unique NameDY258673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1160
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_DEHE1 (ATP synthase subunit beta OS=Dehalococcoides ethenogenes (strain 195) GN=atpD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.351e-20
Identity = 75/247 (30.36%), Postives = 114/247 (46.15%), Query Frame = 1
Query:   16 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            P   +L +   +L TG +V+D + P   GG     G  G GKTV+ Q L +     +    V+ G GER  E  ++  +            +  V+ +TT+V    N   A R     TG+T+AEYFRD    +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T   AV  P  D++DP   AT   +     L++ LA++  +P+V+ L S S+
Sbjct:  115 PAMDELESSAQVLETGLKVIDLIAPFARGGKIGALGGAGVGKTVLIQELIRNIATEHEGFSVFAGVGERSREGNDLWHEM----------EDSGVLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSR 344          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_AZOC5 (ATP synthase subunit beta OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.351e-20
Identity = 70/237 (29.54%), Postives = 115/237 (48.52%), Query Frame = 1
Query:   49 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            L+TG +V+D L P   GG   + G  G GKTV+   L      ++    V+ G GER   GN++   +++  ++ +   +    S   +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  +A+ + +     L + +A++  +P+V+ L S S+
Sbjct:  128 LVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIE-SKVNVDPHENNGSSAGSKCALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------TKGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSR 356          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.351e-20
Identity = 75/238 (31.51%), Postives = 117/238 (49.16%), Query Frame = 1
Query:   49 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            L+TG +V+D L P + GG   + G  G GKTV+ Q L       +    V+ G GER   GN++   ++D     + L +G  E    +  LV    N P  AR     +G+T+AEYFRD  G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T V A+  P  D +DP  + + S +     L++ +A++  +P+V+ L S S+
Sbjct:  129 LVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEMIDAG--VIKLGEGTTEG--SKVALVYGQMNEPPGARMRVGLSGLTMAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGALQERITSTK-------KGSITSVQAIYVPADDLTDPAPATSFSHLDATTTLNRAIAEKGIYPAVDPLDSTSR 355          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: FLII_ECOLI (Flagellum-specific ATP synthase OS=Escherichia coli (strain K12) GN=fliI PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 70/229 (30.57%), Postives = 115/229 (50.22%), Query Frame = 1
Query:   55 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            TG R ++AL     G    +    G GK+V+   +++Y+ +D +V    GERG E+ + + +     +   +GR  SV+    + A     P+   + + Y    IAE FRD G +V ++ DS +R+A A REI+  + E PA  GYP  + A+L +  ERAG      G    GS+T    V   G D  DP+  +  +I+     L ++LA+  H+P+++   S S+
Sbjct:  161 TGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIEN-----ILGAEGRARSVV----IAAPADVSPLLRMQGAAYA-TRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG-----NGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISR 374          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 72/254 (28.35%), Postives = 120/254 (47.24%), Query Frame = 1
Query:    1 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            +  P P  ++ A +  +L TG +V+D L P   GG   + G  G GKTV+   L      ++    V+ G GER   GN++   +++   +     +    +   +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  +A+ + +     L + +A++  +P+V+ L S S+
Sbjct:  111 IHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE-SNVNKDPHENGGSAAGSKCALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------TKGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSR 356          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_THIDA (ATP synthase subunit beta OS=Thiobacillus denitrificans (strain ATCC 25259) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 76/246 (30.89%), Postives = 112/246 (45.53%), Query Frame = 1
Query:   16 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            P  +  AA   +L TG +V+D + P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           +E  V+ +  LV    N P   R     TG+T+AEYFRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T   AV  P  D +DP  + T + +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYADQAATVEILETGIKVIDLIMPIAKGGKVGLFGGAGVGKTVTLMELIRNIAVQHSGFSVFAGVGERTREGNDFYHEM----------KEGGVLDKVALVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLADEMGRLQERITSTK-------TGSITSFQAVYVPADDLTDPSPATTFAHLDATLVLSRQVAELGIYPAVDPLDSTSR 341          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_THEAB (ATP synthase subunit beta OS=Thermosipho africanus (strain TCF52B) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 76/250 (30.40%), Postives = 114/250 (45.60%), Query Frame = 1
Query:    4 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            + P  ++ +  +   L TG +V+D L P   GG     G  G GKTV+   L +     +    ++ G GER  E  E+ +D           +E  V+  T LV    N P  AR     T +T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V A+  P  D +DP  + T + +     L ++ A    +P+V+ L S SK
Sbjct:  118 KAPPSITEQSTSVEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIAIEHHGFSMFAGVGERTREGNELYLDM----------QEAEVLDNTVLVFGQMNEPPGARFRVALTALTMAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITSTK-------KGSITSVQAIYVPADDITDPAPATTFTHLDATVVLSRRRAALGLYPAVDPLDSTSK 350          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_SYNJA (ATP synthase subunit beta OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 78/253 (30.83%), Postives = 113/253 (44.66%), Query Frame = 1
Query:    4 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQAL---SKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYQQ 750
            R+  P         P  TG +V+D L P   GG   + G  G GKTV+ Q L       +S   V+ G GER  E  ++  +           +E  V+ +  LV    N P  AR     T +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T + +     L + LA +  +P+V+ L S S   Q
Sbjct:  125 RSAPPFVELTVKPEPFETGIKVIDLLAPFKRGGKVGLFGGAGVGKTVLIQELIHNIAEEHSGLSVFAGVGERTREGNDLYNEM----------KESGVLDKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGNLQERITSTK-------QGSITSVQAVYVPADDLTDPAPATTFAHLDSTVVLSRSLAAKGIYPAVDPLDSSSTILQ 360          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_SODGM (ATP synthase subunit beta OS=Sodalis glossinidius (strain morsitans) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 78/251 (31.08%), Postives = 118/251 (47.01%), Query Frame = 1
Query:    1 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            +  P P   +LA+   LL TG +V+D + P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +    + ++T       + +V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+
Sbjct:  110 IHRPAPSYEELASSQDLLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDF---YHEMT-------DSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSR 343          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_CYTLY (ATP synthase subunit beta OS=Cytophaga lytica GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 79/256 (30.86%), Postives = 119/256 (46.48%), Query Frame = 1
Query:   49 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTM---------TLPDGR------EESVMK--RTTLVANTSNMPVAAREASIYTGITIAEYFRD-----MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            L TG +V+D + P   GG   + G  G GKTV+ Q L       +    V+ G GER  E  ++L +  +  +         ++ +G       ++SVMK  + T V    N P  AR     +G+TIAEYFRD      G +V    D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T + +     L +K+A+   +P+V+ L S S+
Sbjct:  133 LFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTREGNDLLREMLESGIIKYGDDFMHSMEEGGWDLSKVDKSVMKDSKATFVFGQMNEPPGARARVALSGLTIAEYFRDGAGEGQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQERITSTK-------RGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSR 381          
The following BLAST results are available for this feature:
BLAST of DY258673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_DEHE14.351e-2030.36ATP synthase subunit beta OS=Dehalococcoides ethen... [more]
ATPB_AZOC54.351e-2029.54ATP synthase subunit beta OS=Azorhizobium caulinod... [more]
ATPB_ACICJ4.351e-2031.51ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
FLII_ECOLI5.682e-2030.57Flagellum-specific ATP synthase OS=Escherichia col... [more]
ATPB_XANP25.682e-2028.35ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_THIDA5.682e-2030.89ATP synthase subunit beta OS=Thiobacillus denitrif... [more]
ATPB_THEAB5.682e-2030.40ATP synthase subunit beta OS=Thermosipho africanus... [more]
ATPB_SYNJA5.682e-2030.83ATP synthase subunit beta OS=Synechococcus sp. (st... [more]
ATPB_SODGM5.682e-2031.08ATP synthase subunit beta OS=Sodalis glossinidius ... [more]
ATPB_CYTLY5.682e-2030.86ATP synthase subunit beta OS=Cytophaga lytica GN=a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258673 ID=DY258673; Name=DY258673; organism=Citrus clementina; type=EST; length=1160bp
GTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCACT
GCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGTG
GGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAGT
CAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTTG
TGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAAT
TGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACA
ACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTTC
GATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTACA
ATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCGT
GAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGC
TTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTTA
AATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGCA
GTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCT
CAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAA
AGCATTTTCCTTCTGTAAACTGGCTTATTTCTTACTCGAAGTATCAACAG
CATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAAG
ACAAAGGCTAGAGAGGTGCTGCAGAAAGAAGATGAACTGAATGAAAATGT
GCCACTTGTCCGAAAGGATGCTTTGGCTGAAGGAAAATAAAATACGCTAG
AGACTGCTAAGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCTTTACTC
CATATGACAGTTCTGCCCTTTCCTACAGTCTGTTTGGATAAAGCCTAACA
TTATCCCTTTCTATAACTTGGCCCAATAGGCCGAAAAAAAAGGGAACTGG
GTAAGGAAGGGGCAAAAAAAAAACTAAACCCCCCTTTCAACCACCTCCGC
GGGGGGAAAATTATATTTTTAACAAAAAAAAAATTCCCAAAAAAATTTTA
GAAAAACCCA
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