DY258673

Overview
NameDY258673
Unique NameDY258673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1160
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_CLOTH (ATP synthase subunit beta OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 72/235 (30.64%), Postives = 112/235 (47.66%), Query Frame = 1
Query:   49 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            L TG +V+D L P   GG   + G  G GKTV+   L +     +    V+ G GER  E  ++  +            E  V+++T LV    N P  +R     TG+T+AEYFRD +G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T + +     L + + ++  +P+V+ L S S+
Sbjct:  130 LETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELIRNIATEHGGYSVFTGVGERSREGNDLWNEM----------NESGVIEKTALVFGQMNEPPGSRMRVGLTGLTMAEYFRDELGQDVLLFIDNIFRFIQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRHIVEQGIYPAVDPLDSTSR 347          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 76/250 (30.40%), Postives = 114/250 (45.60%), Query Frame = 1
Query:    4 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            R   P+  +      L TG +V+D L P + GG   + G  G GKTVI   L       +    V+ G GER  E  ++  +           +E  V+ +T +V    N P   R     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R GS+T V AV  P  D +DP  + T + +     L +++A+   +P+V+ L S S+
Sbjct:  120 RPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQHGGISVFAGVGERTREGNDLYHEM----------KEAGVLDKTIMVFGQMNEPPGVRLRVGLTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST-------RKGSITSVQAVYVPADDLTDPAPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSR 352          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_AZOPC (ATP synthase subunit beta OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=atpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 78/256 (30.47%), Postives = 118/256 (46.09%), Query Frame = 1
Query:   49 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQAL----SKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMT-----LPDGR------------EESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM----GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            L TG +V+D L P + GG   + G  G GKTV+   L    +K  N  +V + G GER  E  ++L +  +  +        +G             EE    + TLV    N P  AR + + +G+TIAE FRD     G++V    D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T + AV  P  D +DP  + T + +     LD+K+ +   +P+V+ L S S+
Sbjct:  132 LFTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKKHNGFSV-FAGVGERTREGNDLLREMIESGVIRYGKEFEEGMRLGEWDLSKIDYEELKKSQATLVFGQMNEPPGARSSVVLSGLTIAEAFRDQSGSDGHDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGKMQERITSTK-------NGSITSIQAVYVPADDLTDPAPATTFTFLDATTVLDRKIFELGIYPAVDPLNSVSR 379          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB1_MYCPU (ATP synthase subunit beta 1 OS=Mycoplasma pulmonis GN=atpD1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.682e-20
Identity = 75/238 (31.51%), Postives = 110/238 (46.22%), Query Frame = 1
Query:   49 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            L TG +V+D L P   GG   + G  G GKTV+ Q L       +    V+ G GER   GN++   ++                V+ +TTLV    N P  AR     TG+T+AEYFRD    +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V AV  P  D +DP  + T + +     L++ +A    +P+++ L S S+
Sbjct:  130 LETGIKVIDLLVPYSKGGKIGLFGGAGVGKTVLVQELINNIATQHGGLSVFAGVGERTREGNDLYHEMI-------------ASGVLDKTTLVFGQMNEPPGARMRVALTGLTMAEYFRDKFKQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------NGSITSVQAVYVPADDLTDPAPATTFTHLDAKTVLERNIAALGIYPAIDPLASSSR 347          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_PORPU (ATP synthase subunit beta, chloroplastic OS=Porphyra purpurea GN=atpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.421e-20
Identity = 77/255 (30.20%), Postives = 117/255 (45.88%), Query Frame = 1
Query:    1 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYQQ 750
            +  P P  +KL     +  TG +V+D L P   GG   + G  G GKTV+   L      ++    V+ G GER  E  ++ M+  +  +   D  +ES   +  LV    N P  AR     T +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER             GS+T + AV  P  D +DP  + T + +     L + LA +  +P+V+ L S S   Q
Sbjct:  115 IHRPAPAFTKLETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESKVINEDNLKES---KVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTT-------EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRNLAAKGIYPAVDPLDSTSTMLQ 359          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_PARUW (ATP synthase subunit beta OS=Protochlamydia amoebophila (strain UWE25) GN=atpD PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 7.421e-20
Identity = 71/233 (30.47%), Postives = 113/233 (48.50%), Query Frame = 1
Query:   55 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY-NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            TG +V+D L P   GG   + G  G GK+VI   L       +    V+ G GER  E  ++ ++           +E  ++ +T+LV    N P  AR     TG+T+AE+FRD  + NV +  D+  R+ +A  E+S  L  MP+  GY   LA+ + S  ER    K        GS+T V A+  P  D++DP  ++    +     L +++A+   +P+V+ L S S+
Sbjct:  131 TGIKVIDLLCPYTKGGKVGLFGGAGVGKSVIVMELIHNIATHHGGYSVFCGIGERTREGNDLWLEM----------KESGILSKTSLVFGQMNEPPGARMRVGLTGLTMAEHFRDQEHQNVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLASEIGSLQERITSTK-------HGSITSVQAIYVPADDYTDPAPASIFPHLDAATTLSRQIAELGIYPAVDPLNSSSR 346          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_MYCPE (ATP synthase subunit beta OS=Mycoplasma penetrans GN=atpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.421e-20
Identity = 74/236 (31.36%), Postives = 112/236 (47.46%), Query Frame = 1
Query:   55 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            TG +V+D L P V GG   + G  G GKTV+ Q L       +    ++ G GER   GN++   ++D               V+ +T LV    N P  AR     T +T+AE+FR+    +V +  D+  R+++A  E+S  L  +P+  GY   LA  +    ER    K       +GS+T V AV  P  D +DP  S T + +     LD+K+A    +P++N L S S+
Sbjct:  426 TGIKVIDLLVPYVKGGKIGLFGGAGVGKTVLVQELIHNIATGHGGLSIFAGVGERTREGNDLYHEMID-------------GGVINQTALVFGQMNEPPGARMRVALTALTMAEHFRENNKQDVLLFIDNIFRFSQAGSEVSALLGRIPSAVGYQPTLAFEMGQLQERITSTK-------SGSITSVQAVYVPADDLTDPAPSTTFAHLDAKTVLDRKIASLGIYPAINPLESSSR 641          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_FERIS (ATP synthase subunit beta OS=Fervidobacterium islandicum GN=atpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.421e-20
Identity = 75/252 (29.76%), Postives = 115/252 (45.63%), Query Frame = 1
Query:    1 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            +  P P  ++   +  +L TG +V+D L P   GG     G  G GKTV+   + +     +    ++ G GER  E  ++ ++            E  V+  T LV    N P  AR     T +TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   L+  +    ER    K        GS+T V A+  P  D +DP  + T + +     L ++LA    +P+V+ L S SK
Sbjct:  115 IHRPAPSMTEQKTEIEILETGLKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMEMIRNIAIEHHGFSIFAGVGERTREGNDLYLEMT----------EAGVLNNTVLVFGQMNEPPGARFRVALTALTIAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTDMGELQERITSTK-------KGSITSVQAIYVPADDITDPAPATTFTHLDATIVLSRQLAALGLYPAVDPLDSTSK 349          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_COXBR (ATP synthase subunit beta OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.421e-20
Identity = 76/251 (30.28%), Postives = 116/251 (46.22%), Query Frame = 1
Query:    1 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            +  P P   + +  T LL TG +V+D L P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           +E +V+ +  LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T + AV  P  D +DP  + T + +     L +++A+R  +P+++ L S S+
Sbjct:  111 IHRPAPSFIEQSGTTELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM----------KESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGALQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSR 344          
BLAST of DY258673 vs. ExPASy Swiss-Prot
Match: ATPB_CHLT3 (ATP synthase subunit beta OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.421e-20
Identity = 77/255 (30.20%), Postives = 116/255 (45.49%), Query Frame = 1
Query:    1 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 741
            +  P P   +L+    +  TG +V+D L P   GG   + G  G GKTV+   L        S   V+ G GER   GN++ E +             +E  V+ +T LV    N P  AR     T ++IAEYFRD    +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T V A+  P  D +DP  + T + +     L + +A+   +P+V+ L S S+
Sbjct:  111 IHRPSPAFDELSTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGYSVFAGVGERTREGNDLWEEM-------------KESGVIDKTALVFGQMNEPPGARARVALTALSIAEYFRDEENRDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERIVSTK-------KGSITSVQAIYVPADDLTDPAPATTFTHLDATTVLSRSIAELGIYPAVDPLDSTSR 345          
The following BLAST results are available for this feature:
BLAST of DY258673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CLOTH5.682e-2030.64ATP synthase subunit beta OS=Clostridium thermocel... [more]
ATPB_CARHZ5.682e-2030.40ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB_AZOPC5.682e-2030.47ATP synthase subunit beta OS=Azobacteroides pseudo... [more]
ATPB1_MYCPU5.682e-2031.51ATP synthase subunit beta 1 OS=Mycoplasma pulmonis... [more]
ATPB_PORPU7.421e-2030.20ATP synthase subunit beta, chloroplastic OS=Porphy... [more]
ATPB_PARUW7.421e-2030.47ATP synthase subunit beta OS=Protochlamydia amoebo... [more]
ATPB_MYCPE7.421e-2031.36ATP synthase subunit beta OS=Mycoplasma penetrans ... [more]
ATPB_FERIS7.421e-2029.76ATP synthase subunit beta OS=Fervidobacterium isla... [more]
ATPB_COXBR7.421e-2030.28ATP synthase subunit beta OS=Coxiella burnetii (st... [more]
ATPB_CHLT37.421e-2030.20ATP synthase subunit beta OS=Chloroherpeton thalas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258673 ID=DY258673; Name=DY258673; organism=Citrus clementina; type=EST; length=1160bp
GTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCACT
GCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGTG
GGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAGT
CAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTTG
TGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAAT
TGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACA
ACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTTC
GATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTACA
ATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCGT
GAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGC
TTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTTA
AATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGCA
GTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCT
CAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAA
AGCATTTTCCTTCTGTAAACTGGCTTATTTCTTACTCGAAGTATCAACAG
CATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAAG
ACAAAGGCTAGAGAGGTGCTGCAGAAAGAAGATGAACTGAATGAAAATGT
GCCACTTGTCCGAAAGGATGCTTTGGCTGAAGGAAAATAAAATACGCTAG
AGACTGCTAAGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCTTTACTC
CATATGACAGTTCTGCCCTTTCCTACAGTCTGTTTGGATAAAGCCTAACA
TTATCCCTTTCTATAACTTGGCCCAATAGGCCGAAAAAAAAGGGAACTGG
GTAAGGAAGGGGCAAAAAAAAAACTAAACCCCCCTTTCAACCACCTCCGC
GGGGGGAAAATTATATTTTTAACAAAAAAAAAATTCCCAAAAAAATTTTA
GAAAAACCCA
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