DY258677

Overview
NameDY258677
Unique NameDY258677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 123.25 bits (308), Expect = 1.889e-27
Identity = 67/191 (35.08%), Postives = 108/191 (56.54%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 586
            +R++ HT    +  + +KK  +ME +V GG++++++D+A    E   +  ++ +F+  E  D+ GVTKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +G+G +                T  GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct:  141 LRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP---------------TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 316          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_METS5 (50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.467e-27
Identity = 75/215 (34.88%), Postives = 117/215 (54.42%), Query Frame = 2
Query:   20 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            S  R+L  TQ   +  L +K   ++E+Q+ GG    +++Y        + V  VF++ +++DIIGVTKG G++GV+ R+GV  LPR  K  +G RKV   G          V + GQ G+H RTE NK++ K+              D T K I P GGF  YG+VK+ YL+++G  +G  KR + LR  +   +++L +   K+ ++D +SK G
Sbjct:  145 SYFRLLVSTQPHLIPALGKKTPDIVEVQIGGGNTKNQLEYGLKLLGNTLSVRDVFKEGQLMDIIGVTKGHGFQGVIKRYGVQELPRWHKHRKGSRKVGTKGP--SLGTPSYVPQPGQMGFHRRTEYNKRILKIS-------------DDT-KLINPKGGFVRYGLVKNTYLLVQGSTIGSIKRPLFLRYPIRPYSAQLPVP--KVTYVDVNSKQG 341          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.222e-27
Identity = 69/212 (32.55%), Postives = 117/212 (55.19%), Query Frame = 2
Query:   17 ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 652
            A  V+++  TQ  K+K   +K   + +I + G  + +K++YA     K++ ++ VF++ + +D+I VTKGKG++GV+ R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + K+G                 + +   GG+  YG V    +++KG   GP+KR++ LR+++     +  +E   I++I  S K
Sbjct:  130 ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG-----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320          
BLAST of DY258677 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.937e-26
Identity = 69/215 (32.09%), Postives = 115/215 (53.49%), Query Frame = 2
Query:   26 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 658
            VR++ HT    M+ + +K   +ME +V GGT+ ++V++         +  +  +F+  E +D  GVTKGKG +G V R+GV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++ ++G G +                T  GGF  YG V   Y +IKG   GP +R++  R ++  + S     + +++++ T+S  G
Sbjct:  141 VRLITHTLPAGMRNIPKKTPDVMETRVGGGTLTDRVEFGLDLISDGGEHEISDIFRAGEYLDAAGVTKGKGTQGPVKRFGVQKRKGKHARQGYRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNGDEP---------------TVDGGFVGYGEVDGPYALIKGSLPGPDQRLLRFRTAV--RPSDQPRLDPEVRYVSTASNQG 338          
The following BLAST results are available for this feature:
BLAST of DY258677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_HALMA1.889e-2735.0850S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_METS52.467e-2734.8850S ribosomal protein L3P OS=Metallosphaera sedula... [more]
RL3_NANEQ3.222e-2732.5550S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_HALWD7.937e-2632.0950S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258677 ID=DY258677; Name=DY258677; organism=Citrus clementina; type=EST; length=882bp
GAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGA
TTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATC
CAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTT
CTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGA
TTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACC
CGTTGGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAA
GGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTG
CCAGAGCTGGTCAGAATGGATACCATCATCGTACTGAAATGAACAAGAAG
GTTTACAAGCTTGGCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGA
ATTTGACAGGACTGAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACT
ATGGTATTGTGAAAGATGATTATTTGATGATCAAGGGATGCTGTGTTGGA
CCTAAGAAGAGGGTGGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATC
TCGTTTAGCTCTTGAGGAAATCAAAATCAAGTTCATTGATACCTCTTCCA
AGTTTGGGCATGGCCGCTTCCAGACTACACAGGAGAAACAGAAGTACTAT
GGACGCATGAAAGCATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTT
ATAGTTAATTCAGGCAGCCTAAATTTTATCCAGTTTGACTATCTTGGAAC
AGTTTTTGAGCCTGGCATCAGCTGTGTTTCTTTTTCCTTTTTTTATTTAT
TTTTTAAGGAGATGGTCGTGCTTTATTTCTAT
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