DY258679

Overview
NameDY258679
Unique NameDY258679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.099e-28
Identity = 82/155 (52.90%), Postives = 93/155 (60.00%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGISG 835
            A S+ VM+SM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  S +TL HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS       + A  L G  P S   G    I      F+  G+ G
Sbjct:   94 ASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGPTGVILSPEEAFKLAGVEG 245          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.099e-28
Identity = 72/112 (64.29%), Postives = 80/112 (71.43%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VMESM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FG+G  SS+ L HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   84 ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGNDSSNILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITAS 195          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.659e-28
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  377 SECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            S+ VM SM+ GTDSYGVTTGFG +S RR +   AL +ELIR LNAG FG G  +SHTL HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   86 SDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGHALQQELIRFLNAGIFGTGTGASHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITAS 195          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.659e-28
Identity = 84/159 (52.83%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGI-SGFSE 844
            A S+ VM+SM  GTDSYGVTTGFG +S RR +  +AL KELIR LNAG FG+   S HTL H A  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS       + A  L G  P S   G   +       F+ VGI SGF E
Sbjct:   93 ASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGVFGSTKESGHTLPHQATRAAMLVRINTLLQGYSGIRFEILEVITKFLNNNVTPCLPLRGTITASGDLVPLSYIAGMLTGR-PNSKAVGPDGQTLSAAEAFEFVGINSGFFE 250          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.136e-27
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VM+SM  GTDSYGVTTGFG +S RR +    L K LIR LNAG FG G  S+HTL HSA  AA+LVR+ TLLQG SGIRFEIL  I     +N  PCLPL GT+ AS
Sbjct:   99 ASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGTLQKNLIRFLNAGVFGIGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNISPCLPLRGTVTAS 210          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.484e-27
Identity = 71/112 (63.39%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VM+SM  GTDSYGVTTGFG +S RR +    L KELIR LNAG FGNG  SSHTL  SA  AA+LVR  TLLQG SGIRFE+L  I      N  PCLPL GTI AS
Sbjct:   87 ASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFGNGTESSHTLPRSATRAAMLVRTNTLLQGYSGIRFEMLEAITKMINHNITPCLPLRGTITAS 198          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.531e-27
Identity = 82/159 (51.57%), Postives = 96/159 (60.38%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGI-SGFSE 844
            A S+ V++SM+ GTDSYGVTTGFG +S RR +   AL  ELIR LNAG FGNG  S+ TL H+A  AA+LVR+ TLLQG SGIRFEI+  I      N  PCLPL GTI AS       + A  L G  P S   G   +I      FQ  GI +GF E
Sbjct:   94 ASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESTQTLPHTATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGR-PNSKSIGPNGQILNAKEAFQLAGIETGFFE 251          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.317e-27
Identity = 84/159 (52.83%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGIS-GFSE 844
            A S+ VMESM+ GTDSYGVTT  G +S RR +   AL KELIR LNAG FGNG  S+HTL H+A  AA+LVR+ TLLQG SGIRFEIL  I      N  PCL L GTI AS       + A  L G  P S   G    I      FQ  GI+ GF E
Sbjct:  101 ASSDWVMESMNKGTDSYGVTTVHGATSHRRTKQGGALQKELIRFLNAGIFGNGSESTHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCL-LRGTITASGDLVPLSYIAGLLTGR-PNSKAHGPSGEILNAREAFQSAGINDGFFE 257          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 5.638e-27
Identity = 71/112 (63.39%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VMESM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FG+   +SHTL HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  P LPL GTI AS
Sbjct:  101 ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGSTKETSHTLPHSATRAAMLVRINTLLQGFSGIRFEILEAITSFLNNNITPSLPLRGTITAS 212          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.256e-26
Identity = 70/112 (62.50%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A SE VMESM+ GTDSYGVTTGFG +S  R +   AL KELIR LNAG FGNG  S+HTL  +A  AA+LVR+ TLLQG SGI FEIL  I         PCLPL GTI AS
Sbjct:  101 ASSEWVMESMNKGTDSYGVTTGFGATSHSRTKQGGALQKELIRFLNAGIFGNGTESNHTLPKTATRAAMLVRINTLLQGYSGIDFEILEAITKPLNKTVTPCLPLRGTITAS 212          
The following BLAST results are available for this feature:
BLAST of DY258679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PAL1_PETCR5.099e-2852.90Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PAL1_DAUCA5.099e-2864.29Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PAL2_IPOBA6.659e-2863.64Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL1_PRUAV6.659e-2852.83Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL2_SOLTU1.136e-2761.61Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]
PAL2_POPKI1.484e-2763.39Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL2_CICAR2.531e-2751.57Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PAL2_PEA4.317e-2752.83Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PAL1_ARATH5.638e-2763.39Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_MEDSA1.256e-2662.50Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258679 ID=DY258679; Name=DY258679; organism=Citrus clementina; type=EST; length=1307bp
GTTAAGCTATCTTTTTACGGCTAGGAATATGACAGTAGGTTGAACTGGCA
GTTGCCACTTGCGGCTGTTACTGCCGCTGCTGTGGTTTGTGTTTGCTATG
CTAGGTGCTGGTGATTGCACGCTGCCCCTGTAGAGAGCGTGCAGATAATA
TTGATGAGGTGACTGCTCTACCTTAGACTACGAATATGTGATAGACTTTC
TATTTTGATTGAGAGGATTTATGTCTTTGCTTGGCTCTATTTTTGACCCC
TTTTATGGATTGGGGGGTCTGACGATGAGTTGAAAGCTGTAACATTTGGA
CGCTGACTGCTCTTGTTTCTTCCGCTACCAATGCGAGATCTATCTATATT
CTCTTCTTTAGAGCGGCTGCGCCTGCAGTGAATGCGTGATGGAGAGCATG
CATACTGGCACGGACAGTTACGGCGTTACCACTGGGTTTGGTGTCTCTTC
TCGTCGCAGAGAAGAGATCCGTAGTGCTCTTCATAAAGAGCTTATTAGAC
TTTTGAACGCTGGAACCTTTGGAAACGGAATATAGTCGTCTCACACGCTA
CTTCACTCAGCACCGATGGCTGCCGTGCTTGTGAGGGTTATCACTCTTCT
CCAGGGCTAATCCGGCATCCGATTTGAAATCCTGTACCCGATCCCATGAT
GCTCAATCACCAACTGCCCTCCATGTCTCCCTCTTCTCGGTACAATCGCT
GCTTCTTGGTTATCGGGACGCGCTTTCTTCTTTGCCCGGACGCTCAACGG
GACGGACCCCTTCTCAGGCCTCCCCGGTCTCATGAAAAGAATCTTTGGGG
TCCATTAGACCTTTCAACCCGTCGGGATTTCAGGTTTTTCGGAGGGGGGG
GTCCTCAGGGGGGGGCCTGCCCCTTGGCAATAGAAAAGGCATTTGAATTT
ATTGGTCCTTTCTCTCCTTCTGCTTCTGTTCTCAGGGCCTCACCCTTTGT
CCATCTGATATCTAAAAAATTTTCCCAGCTCTTTGTTCTGCGGGAGGCCT
AGCTGAACGGCATCCTCTATTTCTCCCTCCTCTCCCTTCGCCCCCCCTCT
TCTCACTGGCCCCGTCTTTTCGGCCCCGCTTTTATGGGGCCGGCTGCCGC
GATACGCGGTCAACCATTCCCCCCCCGCCTTTTCCCTCCTTTTTATTCCT
CTTCCCCTCCTTGCTTTCAAGAAACTTTTCTTTGTCCTTTTATTCGCTGT
ACACACCAACTTCTCTCTTCTTCCCTCCCCACACACAACGCTCCGCGGCG
CCCCCGCTCTCCCGCCTCGCCCCCTCCCCCCCTCAAACAAACATGTTATC
CTCACCA
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