DY258679

Overview
NameDY258679
Unique NameDY258679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.142e-26
Identity = 70/113 (61.95%), Postives = 81/113 (71.68%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*S-SHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VM+SM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FG+G  + ++TL HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   93 ASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAEAGNNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITAS 205          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.142e-26
Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VM+SM  GTDSYGVTTGFG +S RR +   AL +ELIR LNAG FG+ + S+H L H+A  AA+LVR  TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   86 ASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQRELIRFLNAGIFGSSLDSTHKLPHTATRAAMLVRFNTLLQGYSGIRFEILEAITKFLNGNITPCLPLRGTITAS 197          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.772e-26
Identity = 68/106 (64.15%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  389 MESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            MESM  GTDSYGVTTGFG +S RR +   ALHKELIR LNAG FG    S HTL  SA  AA+LVR+ TLLQG SGIRFEIL  I      +  PCLPL GTI AS
Sbjct:    1 MESMDKGTDSYGVTTGFGATSHRRTKQGGALHKELIRFLNAGIFGTNGESGHTLAPSATRAAMLVRINTLLQGYSGIRFEILEAITSLLNHSITPCLPLRGTITAS 106          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.141e-26
Identity = 75/139 (53.96%), Postives = 89/139 (64.03%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASW-----------LSGRAFFFARTLNGT 754
            A S+ V+ES+  GTDSYGVTTGFG +S RR +   AL KELI+ LNAG FG+G  +S+TL  +A  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS            L+GR    ART NG+
Sbjct:   82 ASSDWVLESVDKGTDSYGVTTGFGATSHRRTKQGGALQKELIKFLNAGIFGSG--NSNTLPSAATRAAMLVRINTLLQGYSGIRFEILKAIATLLNKNITPCLPLRGTITASGDLVPLSYLAGILTGRPNSKARTPNGS 218          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.063e-25
Identity = 70/112 (62.50%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VMESM+ GTDSYGVTTGFG +S RR +  +AL  ELIR LNAG FGN   + HTL  SA  AA+LVRV TLLQG SGIRFEIL  I      N  P LPL GTI AS
Sbjct:   93 ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGTALQTELIRFLNAGIFGNTKETCHTLPQSATRAAMLVRVNTLLQGYSGIRFEILEAITSLLNHNISPSLPLRGTITAS 204          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.814e-25
Identity = 81/159 (50.94%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI-*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGISGFSE 844
            A SE VMESM+ GTDSYGVTTGFG +S RR +   AL  ELIR LNAG FG G   +SHTL      AA+LVRV TLLQG SGIRFEIL  I         PCLPL GTI AS       + A  L G  P S   G           F+  G+S F E
Sbjct:   83 ASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGPGAGDTSHTLPKPTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHEITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGPSGETLTASEAFKLAGVSSFFE 240          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.000e-25
Identity = 67/112 (59.82%), Postives = 73/112 (65.18%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VM SM  GTDSYGVTTGFG +S RR +   AL +ELIR LNAG FG G    H L   A  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   90 ASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGT-DGHVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITAS 200          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.000e-25
Identity = 67/112 (59.82%), Postives = 73/112 (65.18%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VM SM  GTDSYGVTTGFG +S RR +   AL +ELIR LNAG FG G    H L   A  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   90 ASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGT-DGHVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITAS 200          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.176e-24
Identity = 67/110 (60.91%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  377 SECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            S+ VM SM  GTDSYGVTTGFG +S RR +   AL +ELIR LNAG FG G    H L  +A  AA+LVRV TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   79 SDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGT-DGHVLPAAATRAAMLVRVNTLLQGYSGIRFEILETIATLLNANVTPCLPLRGTITAS 187          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 6.450e-23
Identity = 80/163 (49.08%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*S---SHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNC--PPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGISGFSE 844
            A S+ VMESM+  TD+YG+TTGFG SSRRR +  +AL KELIR LNAG F  G      S+TL   A  AA+L+RV TLLQG SGIRFEIL  I   ++ NC   P LPL GTI AS       + A  L G  P S   G    I      F+  G+S F E
Sbjct:   78 ASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFATGNEDDDRSNTLPRPATRAAMLIRVNTLLQGYSGIRFEILEAI--TTLLNCKITPLLPLRGTITASGDLVPLSYIAGFLIGR-PNSRSVGPSGEILTALEAFKLAGVSSFFE 237          
The following BLAST results are available for this feature:
BLAST of DY258679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PAL3_PETCR2.142e-2661.95Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PAL1_RUBID2.142e-2660.71Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PALY_PERAE4.772e-2664.15Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PALY_BROFI8.141e-2653.96Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PAL2_ARATH1.063e-2562.50Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL4_ARATH1.814e-2550.94Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PAL2_ORYSJ9.000e-2559.82Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI9.000e-2559.82Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_WHEAT1.176e-2460.91Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL3_ARATH6.450e-2349.08Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3AA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258679 ID=DY258679; Name=DY258679; organism=Citrus clementina; type=EST; length=1307bp
GTTAAGCTATCTTTTTACGGCTAGGAATATGACAGTAGGTTGAACTGGCA
GTTGCCACTTGCGGCTGTTACTGCCGCTGCTGTGGTTTGTGTTTGCTATG
CTAGGTGCTGGTGATTGCACGCTGCCCCTGTAGAGAGCGTGCAGATAATA
TTGATGAGGTGACTGCTCTACCTTAGACTACGAATATGTGATAGACTTTC
TATTTTGATTGAGAGGATTTATGTCTTTGCTTGGCTCTATTTTTGACCCC
TTTTATGGATTGGGGGGTCTGACGATGAGTTGAAAGCTGTAACATTTGGA
CGCTGACTGCTCTTGTTTCTTCCGCTACCAATGCGAGATCTATCTATATT
CTCTTCTTTAGAGCGGCTGCGCCTGCAGTGAATGCGTGATGGAGAGCATG
CATACTGGCACGGACAGTTACGGCGTTACCACTGGGTTTGGTGTCTCTTC
TCGTCGCAGAGAAGAGATCCGTAGTGCTCTTCATAAAGAGCTTATTAGAC
TTTTGAACGCTGGAACCTTTGGAAACGGAATATAGTCGTCTCACACGCTA
CTTCACTCAGCACCGATGGCTGCCGTGCTTGTGAGGGTTATCACTCTTCT
CCAGGGCTAATCCGGCATCCGATTTGAAATCCTGTACCCGATCCCATGAT
GCTCAATCACCAACTGCCCTCCATGTCTCCCTCTTCTCGGTACAATCGCT
GCTTCTTGGTTATCGGGACGCGCTTTCTTCTTTGCCCGGACGCTCAACGG
GACGGACCCCTTCTCAGGCCTCCCCGGTCTCATGAAAAGAATCTTTGGGG
TCCATTAGACCTTTCAACCCGTCGGGATTTCAGGTTTTTCGGAGGGGGGG
GTCCTCAGGGGGGGGCCTGCCCCTTGGCAATAGAAAAGGCATTTGAATTT
ATTGGTCCTTTCTCTCCTTCTGCTTCTGTTCTCAGGGCCTCACCCTTTGT
CCATCTGATATCTAAAAAATTTTCCCAGCTCTTTGTTCTGCGGGAGGCCT
AGCTGAACGGCATCCTCTATTTCTCCCTCCTCTCCCTTCGCCCCCCCTCT
TCTCACTGGCCCCGTCTTTTCGGCCCCGCTTTTATGGGGCCGGCTGCCGC
GATACGCGGTCAACCATTCCCCCCCCGCCTTTTCCCTCCTTTTTATTCCT
CTTCCCCTCCTTGCTTTCAAGAAACTTTTCTTTGTCCTTTTATTCGCTGT
ACACACCAACTTCTCTCTTCTTCCCTCCCCACACACAACGCTCCGCGGCG
CCCCCGCTCTCCCGCCTCGCCCCCTCCCCCCCTCAAACAAACATGTTATC
CTCACCA
back to top