DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPS (Spermidine synthase OS=Yersinia pseudotuberculosis GN=speE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.950e-22
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +L++ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPB (Spermidine synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=speE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.950e-22
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +L++ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERP3 (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=speE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.950e-22
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +L++ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SERP5 (Spermidine synthase OS=Serratia proteamaculans (strain 568) GN=speE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.950e-22
Identity = 49/112 (43.75%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +L++ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH  VE+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHQGVEQITMVEIDAGVVEFCRQYLPNHNAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BACC1 (Spermidine synthase OS=Bacillus cereus (strain ATCC 10987) GN=speE PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.077e-22
Identity = 49/125 (39.20%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWL 644
            WF+E      G   + ++ + L   ++++Q + + ++  +G +LILDG++  TE+DE  Y EM+ H+PL + PNP+NVLV+GGGDG V+RE+ +H SV+K  + EID    +  KQ+ P + G L
Sbjct:    4 WFTEKQTKHFGI--TARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGAL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE1_BACAN (Spermidine synthase 1 OS=Bacillus anthracis GN=speE1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.077e-22
Identity = 49/125 (39.20%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWL 644
            WF+E      G   + ++ + L   ++++Q + + ++  +G +LILDG++  TE+DE  Y EM+ H+PL + PNP+NVLV+GGGDG V+RE+ +H SV+K  + EID    +  KQ+ P + G L
Sbjct:    4 WFTEKQTKHFGI--TARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGAL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE1_BACCR (Spermidine synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=speE1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.186e-21
Identity = 48/125 (38.40%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWL 644
            WF+E      G   + ++ + L   ++++Q + + ++  +G +LILDG++  TE+DE  Y EM+ H+PL + PNP+NVL++GGGDG V+RE+ +H SV+K  + EID    +  KQ+ P + G L
Sbjct:    4 WFTEKQTKHFGI--TARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLIVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGAL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTE (Spermidine synthase OS=Clostridium tetani GN=speE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.548e-21
Identity = 47/105 (44.76%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  318 KVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            K+++ L + K++YQ++ +  +   G++L+LDG++Q + +DE  Y EMITH+PL + PNPK VLV+GGGDG  +REI +H SVEK  + EID+   K  K+  P++
Sbjct:   18 KIKETLVRKKTEYQDLAIVDTYALGRMLVLDGIVQTSIKDEYVYHEMITHIPLYTHPNPKKVLVVGGGDGGTIREILKHPSVEKAVLCEIDEEVVKECKKHLPEI 122          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BACCN (Spermidine synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=speE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.641e-21
Identity = 48/125 (38.40%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWL 644
            WF+E      G   + ++ + L   ++++Q + + ++  +G +LILDG++  TE+DE  Y EM+ H+PL + PNP+NVLV+GGGDG V+RE+ +H SV+K  + EID    +  K++ P + G L
Sbjct:    4 WFTEKQTKHFGI--TARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKKYLPSIAGAL 126          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BUCAT (Spermidine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=speE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.505e-21
Identity = 43/103 (41.75%), Postives = 75/103 (72.82%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            +EK+L++ K+ +  VM+F++S +GK++++D ++Q TERDE  Y EM+TH+P+ +  + K+VL+IGGGDG +LRE+ R+  +E   + EID     + K++FP+
Sbjct:   21 IEKMLYKKKTPHHQVMIFKNSVFGKIMVIDDIVQTTERDEFIYHEMLTHVPIIAHGSIKSVLIIGGGDGGILREVCRYKMIENITMVEIDVNIIDLCKKYFPN 123          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_YERPS6.950e-2242.86Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERPB6.950e-2242.86Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERP36.950e-2242.86Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_SERP56.950e-2243.75Spermidine synthase OS=Serratia proteamaculans (st... [more]
SPEE_BACC19.077e-2239.20Spermidine synthase OS=Bacillus cereus (strain ATC... [more]
SPEE1_BACAN9.077e-2239.20Spermidine synthase 1 OS=Bacillus anthracis GN=spe... [more]
SPEE1_BACCR1.186e-2138.40Spermidine synthase 1 OS=Bacillus cereus (strain A... [more]
SPEE_CLOTE1.548e-2144.76Spermidine synthase OS=Clostridium tetani GN=speE ... [more]
SPEE_BACCN2.641e-2138.40Spermidine synthase OS=Bacillus cereus subsp. cyto... [more]
SPEE_BUCAT4.505e-2141.75Spermidine synthase OS=Buchnera aphidicola subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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