DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BUCAI (Spermidine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=speE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.505e-21
Identity = 43/103 (41.75%), Postives = 75/103 (72.82%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            +EK+L++ K+ +  VM+F++S +GK++++D ++Q TERDE  Y EM+TH+P+ +  + K+VL+IGGGDG +LRE+ R+  +E   + EID     + K++FP+
Sbjct:   21 IEKMLYKKKTPHHQVMIFKNSVFGKIMVIDDIVQTTERDEFIYHEMLTHVPIIAHGSIKSVLIIGGGDGGILREVCRYKMIENITMVEIDVNIIDLCKKYFPN 123          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BUCA5 (Spermidine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=speE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.505e-21
Identity = 43/103 (41.75%), Postives = 75/103 (72.82%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            +EK+L++ K+ +  VM+F++S +GK++++D ++Q TERDE  Y EM+TH+P+ +  + K+VL+IGGGDG +LRE+ R+  +E   + EID     + K++FP+
Sbjct:   21 IEKMLYKKKTPHHQVMIFKNSVFGKIMVIDDIVQTTERDEFIYHEMLTHVPIIAHGSIKSVLIIGGGDGGILREVCRYKMIENITMVEIDVNIIDLCKKYFPN 123          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PHOLL (Spermidine synthase OS=Photorhabdus luminescens subsp. laumondii GN=speE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.884e-21
Identity = 46/112 (41.07%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+K+L+  K+++Q++++F+++T G+++ LDG +Q TERDE  Y EM+ H+PL +  N K VL+IGGGDG +LRE+ RH  +E   + EID    +  +Q+ P+      D P
Sbjct:   21 VDKVLYHDKTEHQDLIIFENATLGRIMALDGTVQTTERDEFIYHEMMAHVPLFAHGNAKRVLIIGGGDGGMLREVCRHQYLESITMVEIDAGVVEFCRQYLPNHNAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK5 (Spermidine synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=speE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.685e-21
Identity = 46/116 (39.66%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  306 AHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            A + K+++ L   K+ YQ + +  +   G++L+LDG++Q T +DE  Y EMITH+PL + PNP+ VL++GGGDG  +RE+ +H +VEK  + EID+      K++ P++   L +P
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVYECKKYLPEISCELDNP 129          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK1 (Spermidine synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=speE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.685e-21
Identity = 46/116 (39.66%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  306 AHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            A + K+++ L   K+ YQ + +  +   G++L+LDG++Q T +DE  Y EMITH+PL + PNP+ VL++GGGDG  +RE+ +H +VEK  + EID+      K++ P++   L +P
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVYECKKYLPEISCELDNP 129          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THENN (Spermidine synthase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=speE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.004e-20
Identity = 44/113 (38.94%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  315 LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +K+ ++++ G+SD Q + +F++   G V  LDG+   TE+DE  Y EM+ H+P+   PNPK VL+IGGGDG  LRE+ +H SVEK  + E+D +  +  +++         DP
Sbjct:   32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 144          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THEMA (Spermidine synthase OS=Thermotoga maritima GN=speE PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.004e-20
Identity = 44/113 (38.94%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  315 LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +K+ ++++ G+SD Q + +F++   G V  LDG+   TE+DE  Y EM+ H+P+   PNPK VL+IGGGDG  LRE+ +H SVEK  + E+D +  +  +++         DP
Sbjct:   32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 144          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PSESM (Spermidine synthase OS=Pseudomonas syringae pv. tomato GN=speE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.004e-20
Identity = 46/113 (40.71%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  291 MWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            ++ G     ++EK+L + ++++Q++++FQ+   G+V+ LDGVIQ TE DE  Y EM+TH+P+ +    K VL+IGGGDG +LRE+++H +VE   + EID    ++ K+F P+
Sbjct:    8 LYEGYGQRFRMEKMLHEVRTEHQHLVIFQNPRMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAAKRVLIIGGGDGGMLREVAKHLTVEHITMVEIDATVVEMCKEFLPN 120          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_THEP1 (Spermidine synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=speE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.311e-20
Identity = 44/113 (38.94%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  315 LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +K+ ++++ G+SD Q + +F++   G V  LDG+   TE+DE  Y EM+ H+P+   PNPK VL+IGGGDG  LRE+ +H SVEK  + E+D +  +  +++         DP
Sbjct:   32 MKINRMIYSGQSDIQRIDIFENPDLGVVFSLDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAVLCEVDGLVIEAARKYLKQTSCGFDDP 144          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_HAMD5 (Spermidine synthase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=speE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.311e-20
Identity = 47/127 (37.01%), Postives = 83/127 (65.35%), Query Frame = 3
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            +W  + HS       ++++L++ K+D+Q++++F +  +G+V+ L+ V+Q TERDE  Y EM+TH+PL +  + K VL+IGGGDG +LRE+ RH+ V++  + EID+    + +++FP       D P
Sbjct:    6 LWYEKLHSSFGQYFSIKEVLYRDKTDHQDLIIFDTEEFGRVMALNHVVQTTERDEFIYHEMMTHVPLLAHGDAKKVLIIGGGDGGILREVCRHAGVKEIIMVEIDQDVVNLCQEYFPHHHAGAYDDP 132          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_BUCAI4.505e-2141.75Spermidine synthase OS=Buchnera aphidicola subsp. ... [more]
SPEE_BUCA54.505e-2141.75Spermidine synthase OS=Buchnera aphidicola subsp. ... [more]
SPEE_PHOLL5.884e-2141.07Spermidine synthase OS=Photorhabdus luminescens su... [more]
SPEE_CLOK57.685e-2139.66Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_CLOK17.685e-2139.66Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_THENN1.004e-2038.94Spermidine synthase OS=Thermotoga neapolitana (str... [more]
SPEE_THEMA1.004e-2038.94Spermidine synthase OS=Thermotoga maritima GN=speE... [more]
SPEE_PSESM1.004e-2040.71Spermidine synthase OS=Pseudomonas syringae pv. to... [more]
SPEE_THEP11.311e-2038.94Spermidine synthase OS=Thermotoga petrophila (stra... [more]
SPEE_HAMD51.311e-2037.01Spermidine synthase OS=Hamiltonella defensa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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