DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULIY (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=speE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.772e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            GW   +    P E H   +EK+  + K+ YQ+V + + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PKNVL++GGG+G  LRE+ ++ SVEK  + +ID+   +  K++
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULIN (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=speE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.772e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            GW   +    P E H   +EK+  + K+ YQ+V + + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PKNVL++GGG+G  LRE+ ++ SVEK  + +ID+   +  K++
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULIM (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=speE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.772e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            GW   +    P E H   +EK+  + K+ YQ+V + + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PKNVL++GGG+G  LRE+ ++ SVEK  + +ID+   +  K++
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULIL (Probable spermidine synthase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=speE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.772e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            GW   +    P E H   +EK+  + K+ YQ+V + + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PKNVL++GGG+G  LRE+ ++ SVEK  + +ID+   +  K++
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULIK (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=speE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.772e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            GW   +    P E H   +EK+  + K+ YQ+V + + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PKNVL++GGG+G  LRE+ ++ SVEK  + +ID+   +  K++
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULIA (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.27) GN=speE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.772e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            GW   +    P E H   +EK+  + K+ YQ+V + + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PKNVL++GGG+G  LRE+ ++ SVEK  + +ID+   +  K++
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PYRAB (Probable spermidine synthase OS=Pyrococcus abyssi GN=speE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.022e-17
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            G   + KV++ +F+G S +Q + V+++  +G++L LDG +QL    E +Y E + H  + + PNP+ VLVIGGGDG  +RE+ RH  VE+  + EID+   +V  +F   + G L D
Sbjct:   10 GYGVAFKVKEKIFEGHSKFQKIEVYETEGFGRLLALDGTVQLVTEGEESYHESLVHPVMLAHPNPRRVLVIGGGDGGTIREVLRHEEVEEAIMVEIDEEVIEVAIKFI-GIDGGLLD 125          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ARCFU (Probable spermidine synthase OS=Archaeoglobus fulgidus GN=speE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.022e-17
Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            WF E    + G   ++KV+K L++ +   Q V ++++ + GK+L++DG IQLTE DE  Y EM+ H+P+ S  NP+ V VIGGGDG  LRE+ +H +VE+  + +ID+    + ++F     G  +D
Sbjct:    3 WFFEY---YDGCGLAIKVKKKLYEAEG-VQKVEIYETESMGKMLVIDGKIQLTELDEPFYHEMLVHVPMLSHENPRKVAVIGGGDGGALREVLKH-NVERAVLVDIDRNVIDLSRKFLKIDHGAFED 124          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SULTO (Probable spermidine synthase OS=Sulfolobus tokodaii GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.276e-17
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            W   I    P E H   + K++ + K+ YQ  ++ + + +GK LILDG IQ T  DE  Y E + H  L SI NP+ +L++GGG+G  LRE+ +H +++   + +ID +     K++  +
Sbjct:    4 WHWHIEWQTPYEFHGHAITKVIAEEKTPYQRALLVELARFGKALILDGKIQSTITDEFIYHEALVHPLLLSINNPEKILILGGGEGATLREVLKHKTIKNVTMVDIDPVVIDFAKKYLQE 123          

HSP 2 Score: 20.4014 bits (41), Expect = 6.276e-17
Identity = 8/19 (42.11%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFVKAGRE 708
            P+  L I DG+ F+K  +E
Sbjct:  132 PKSKLVIEDGYKFIKETKE 150          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_PYRHO (Probable spermidine synthase OS=Pyrococcus horikoshii GN=speE PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.148e-16
Identity = 38/107 (35.51%), Postives = 68/107 (63.55%), Query Frame = 3
Query:  300 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            G   + KV++ + + +S+YQ + V+++  +GK+L +DG +QL    E +Y E + H  + + PNP+ VL+IGGGDG  +RE+ +H  VE+  + EIDK   ++  ++
Sbjct:   13 GYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKY 119          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_SULIY1.772e-1738.66Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIN1.772e-1738.66Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIM1.772e-1738.66Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIL1.772e-1738.66Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIK1.772e-1738.66Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIA1.772e-1738.66Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_PYRAB3.022e-1738.46Probable spermidine synthase OS=Pyrococcus abyssi ... [more]
SPEE_ARCFU3.022e-1738.58Probable spermidine synthase OS=Archaeoglobus fulg... [more]
SPEE_SULTO6.276e-1734.17Probable spermidine synthase OS=Sulfolobus tokodai... [more]
SPEE_PYRHO1.148e-1635.51Probable spermidine synthase OS=Pyrococcus horikos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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