DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_DICDI (Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 3.796e-36
Identity = 72/122 (59.02%), Postives = 92/122 (75.41%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            GWFSEIS  WPG + SL+VEK+L   KS+YQ+ +VF+S ++G VL+LDGVIQ TERDE AYQEMITH+PL S P+PK VLV+GGGDG VLRE+ +H  VE   + EIDK   +  + F P++
Sbjct:    7 GWFSEISEFWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPNM 128          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_NEUCR (Spermidine synthase OS=Neurospora crassa GN=spe-3 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.457e-36
Identity = 73/129 (56.59%), Postives = 95/129 (73.64%), Query Frame = 3
Query:  267 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            GWF EIS MWPG+A +LKVEK+L   KS YQ+V++F+S+ +G VL+LD VIQ TERDE +YQEMITHL + S PNPK VLVIGGGDG VLRE+ +H  VE+  + +ID+   ++ KQF P +    + P
Sbjct:   12 GWFREISNMWPGQAMTLKVEKVLHHEKSLYQDVLIFKSTDHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHDCVEEAILCDIDEAVIRLSKQFLPHMSAGFEHP 140          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPSY_YEAST (Spermine synthase OS=Saccharomyces cerevisiae GN=SPE4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.018e-29
Identity = 58/121 (47.93%), Postives = 90/121 (74.38%), Query Frame = 3
Query:  267 GWFSEISPM-WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            GWF EI+   +PG+A ++ V+ IL++ +S++Q++++F++  YG VL+LDG++Q TE DE AYQEMITH+ + +  NPK VL+IGGGDG VLRE+++HS VE   + EID    ++ ++F P
Sbjct:   13 GWFREINDKSFPGQAFTMTVDSILYEARSEFQDILIFRNKVYGTVLVLDGIVQCTEFDEFAYQEMITHIAMFAHSNPKRVLIIGGGDGGVLREVAKHSCVEDITMVEIDSSVIELSRKFLP 133          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_HYDS0 (Spermidine synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=speE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.494e-27
Identity = 61/128 (47.66%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +F E  P  P   H   + KIL++GKS YQ + V +S  +GK+LILDGV+Q TE++E  Y EM+TH  + +  NP+NVL+IGGGDG +LRE+ +H SV+K  + +IDK   +V K+FFP V   + DP
Sbjct:    5 YFMERDPYAPIR-HCYGISKILYEGKSKYQEIQVVESHYFGKILILDGVVQFTEKNEFFYHEMLTHPVMFAHKNPQNVLIIGGGDGGILREVLKHKSVKKAVLVDIDKDVVEVSKKFFPTVACSMDDP 131          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE1_AQUAE (Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.036e-25
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 3
Query:  309 HSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            H   V KIL+QGKS YQ + V +S  +G++LILDGV+QL E+ E  Y E + H+PL + PNP+NVL+IGGGDG  LRE+ +H  VE+  + +IDK   +V K++ P +    +DP
Sbjct:   17 HCYTVSKILYQGKSPYQEIQVIESPEFGRMLILDGVVQLDEKYEFLYHEYLAHVPLHAHPNPRNVLIIGGGDGGTLREVLKHDIVERAVLVDIDKEVIEVSKKYLPTLSVGFQDP 131          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPS (Spermidine synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=speE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.703e-25
Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +W  E H      S+KV++ L+ GKSD+Q + VF+S  +G    LDG++ +TE+DE  Y +MI H+P+ + PN KNVLVIG GDG  +RE++R+ ++EK D+ EIDK+   V +++ P     L DP
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDP 129          

HSP 2 Score: 20.7866 bits (42), Expect = 1.703e-25
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFVKA 699
            PRV+L   DG  FV++
Sbjct:  129 PRVSLFFEDGLKFVRS 144          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPE (Spermidine synthase OS=Clostridium perfringens GN=speE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.703e-25
Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +W  E H      S+KV++ L+ GKSD+Q + VF+S  +G    LDG++ +TE+DE  Y +MI H+P+ + PN KNVLVIG GDG  +RE++R+ ++EK D+ EIDK+   V +++ P     L DP
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDP 129          

HSP 2 Score: 20.7866 bits (42), Expect = 1.703e-25
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFVKA 699
            PRV+L   DG  FV++
Sbjct:  129 PRVSLFFEDGLKFVRS 144          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOP1 (Spermidine synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=speE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.703e-25
Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +W  E H      S+KV++ L+ GKSD+Q + VF+S  +G    LDG++ +TE+DE  Y +MI H+P+ + PN KNVLVIG GDG  +RE++R+ ++EK D+ EIDK+   V +++ P     L DP
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVEIDKLVVDVCREYLPQTANKLDDP 129          

HSP 2 Score: 20.7866 bits (42), Expect = 1.703e-25
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFVKA 699
            PRV+L   DG  FV++
Sbjct:  129 PRVSLFFEDGLKFVRS 144          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE2_LEPIN (Spermidine synthase 2 OS=Leptospira interrogans GN=speE2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.015e-25
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            W  E   +  G A  +KV++ L    + +Q + VF+S  +G++  LDGV+ +TE DE AY EMI H+P+ S PNP+ VLVIGGGDG  +RE+ +H SV++  + EIDK    V  ++FP++   +KDP
Sbjct:    5 WLDEALELKNGRALKIKVKEFLHSRTTPFQKIDVFESVGFGRMFTLDGVVMMTEADEFAYHEMIVHVPMMSHPNPEKVLVIGGGDGGTVREVLKHPSVKEVHLCEIDKGVIDVCYEYFPEIANAMKDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ALKOO (Spermidine synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=speE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.772e-25
Identity = 53/127 (41.73%), Postives = 83/127 (65.35%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            +W  E H      S+KV+  L+ G+S++Q + VF+S  +GK   LDG++ +TE+DE  Y +MITH+P+ + P  KNVLVIG GDG  +RE++R+ ++E  D+ EIDK+   + K++ P     L+DP
Sbjct:    3 LWYTEQHTEDVRFSIKVDNQLYSGQSEFQRIDVFESKEFGKFFTLDGLMMVTEKDEFIYHDMITHIPMATNPKIKNVLVIGAGDGGTVRELTRYETIENIDMVEIDKLVVDICKEYLPQTASKLEDP 129          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_DICDI3.796e-3659.02Spermidine synthase OS=Dictyostelium discoideum GN... [more]
SPEE_NEUCR8.457e-3656.59Spermidine synthase OS=Neurospora crassa GN=spe-3 ... [more]
SPSY_YEAST2.018e-2947.93Spermine synthase OS=Saccharomyces cerevisiae GN=S... [more]
SPEE_HYDS05.494e-2747.66Spermidine synthase OS=Hydrogenobaculum sp. (strai... [more]
SPEE1_AQUAE1.036e-2547.83Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1... [more]
SPEE_CLOPS1.703e-2543.31Spermidine synthase OS=Clostridium perfringens (st... [more]
SPEE_CLOPE1.703e-2543.31Spermidine synthase OS=Clostridium perfringens GN=... [more]
SPEE_CLOP11.703e-2543.31Spermidine synthase OS=Clostridium perfringens (st... [more]
SPEE2_LEPIN3.015e-2542.97Spermidine synthase 2 OS=Leptospira interrogans GN... [more]
SPEE_ALKOO8.772e-2541.73Spermidine synthase OS=Alkaliphilus oremlandii (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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