DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SYNPX (Spermidine synthase OS=Synechococcus sp. (strain WH8102) GN=speE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.823e-12
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 3 
Query:  330 ILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPG 638
            +L +  S +Q + V +S  YGK L+LDG     E+ E  Y E + H  LCS    + VLVIGGGDG   RE  R+  V   D+ EID    ++ ++  P + G
Sbjct:   20 VLVEETSPFQRISVIRSERYGKGLLLDGCWMTAEQQERHYHEALVHPALCSAEAIERVLVIGGGDGGTARECLRYPEVIHLDLVEIDGRVVELSQEHLPGIGG 122
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE2_THETN (Spermidine synthase 2 OS=Thermoanaerobacter tengcongensis GN=speE2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.453e-11
Identity = 34/92 (36.96%), Postives = 59/92 (64.13%), Query Frame = 3 
Query:  318 KVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDK 593
            KV+ ++ + +S YQ + + +  T+GK L LDG +Q TE DE  Y E++ H  +   P+PK VL+ G G+G+ +RE+ ++ +V++    +IDK
Sbjct:   40 KVKSVIIEHQSLYQKIDIVELETWGKSLFLDGSLQSTESDEFIYHELLVHPAMRVHPSPKRVLICGVGEGKSVREVLKYPTVKEVIGVDIDK 131
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SYNJA (Spermidine synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=speE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.209e-11
Identity = 42/133 (31.58%), Postives = 68/133 (51.13%), Query Frame = 3 
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN----PKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV-PGWLKDP 653
            W  E    W   A +  + +IL   K+ +Q +++ ++  YGK L+LDG  Q T  DE  Y E + H  L  +      P+ VL++GG +G  LRE+ R  SVE+  + +ID    +  ++  P++  G   DP
Sbjct:    9 WAQEYFTPWDYTARA--ITRILAYRKTRFQEMLIAETGAYGKGLMLDGHWQSTTADEFLYHEALVHPALVQVVQAGGIPRRVLILGGAEGATLREVLRWRSVEQVVMVDIDGEVVEACREHLPEMHQGSFADP 139
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_SYNPX3.823e-1237.86Spermidine synthase OS=Synechococcus sp. (strain W... [more]
SPEE2_THETN1.453e-1136.96Spermidine synthase 2 OS=Thermoanaerobacter tengco... [more]
SPEE_SYNJA7.209e-1131.58Spermidine synthase OS=Synechococcus sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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