DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE1_THETN (Spermidine synthase 1 OS=Thermoanaerobacter tengcongensis GN=speE1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.825e-24
Identity = 52/114 (45.61%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            S+KV++ L   K+ YQ++ +  S  +G+VL+LDG++Q TE+DE  Y EMI H+PL +  NPK+VL+IGGGDG  +RE+ +HSSVE+  + EID+   +  K++ P +   L DP
Sbjct:   16 SIKVKETLVVEKTPYQHLAILDSYQFGRVLVLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKDVLIIGGGDGGSVREVLKHSSVERVVLAEIDEAVIRNSKKYLPTISSALDDP 129          

HSP 2 Score: 21.1718 bits (43), Expect = 1.825e-24
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFV 693
            PRV + IGDG  +V
Sbjct:  129 PRVEIMIGDGIKYV 142          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ALKMQ (Spermidine synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=speE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.232e-24
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            S KV++ LF  +S++Q V V  +  +GK++ LDG++ +TE+DE  Y +MI H+P+   PN KNVL+IGGGDG   RE+ R+ S++  D+ EIDKM   V + +FP +   L++P
Sbjct:   16 SFKVKEHLFSEQSEFQKVDVLDTYEFGKLMTLDGLVMVTEKDEFIYHDMIVHVPMAVNPNIKNVLIIGGGDGGTARELMRYQSIKHVDMVEIDKMVCDVARDYFPTISSELENP 129          

HSP 2 Score: 23.483 bits (49), Expect = 5.232e-24
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  652 PRVTLHIGDGFAFVK 696
            PRV+L+  DG AF+K
Sbjct:  129 PRVSLYYEDGVAFIK 143          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BACHD (Spermidine synthase OS=Bacillus halodurans GN=speE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.426e-24
Identity = 50/115 (43.48%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  318 KVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGD 662
            K+++ L   K+D+Q + V ++  +G +L+LDG++  TE+DE  Y EM+ H+PL + PNPK+VLV+GGGDG V+RE+ +H SVEK  + EID    +  K++ P +   L DP  D
Sbjct:   18 KIKRTLHTEKTDFQQLDVIETEEFGNMLVLDGMVMTTEKDEFVYHEMVAHVPLFTHPNPKHVLVVGGGDGGVIREVLKHPSVEKATLVEIDGKVIEYSKKYLPSIATALNDPRVD 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_LEPBP (Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=speE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.698e-24
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            W++E   +  G A S +V K +   +S +Q + +F++ ++G++  LDGV  +T +DE +Y EMI H+P+ S PNP++VLVIGGGDG  +RE+ +H SV++  + EIDK    +  ++FP+    +KDP
Sbjct:    4 WYTEKLELEKGRAVSYRVTKTIESLQSPFQKIDIFETQSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVREVLKHPSVKEVVLCEIDKAVVDISYKYFPECADAMKDP 131          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_LEPBA (Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=speE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.698e-24
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDP 653
            W++E   +  G A S +V K +   +S +Q + +F++ ++G++  LDGV  +T +DE +Y EMI H+P+ S PNP++VLVIGGGDG  +RE+ +H SV++  + EIDK    +  ++FP+    +KDP
Sbjct:    4 WYTEKLELEKGRAVSYRVTKTIESLQSPFQKIDIFETQSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVREVLKHPSVKEVVLCEIDKAVVDISYKYFPECADAMKDP 131          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP3 (Spermidine synthase OS=Klebsiella pneumoniae (strain 342) GN=speE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.698e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  285 SPMWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            +P+W    H        V+ +L+  K+D+Q++++F +  +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  N K+VL+IGGGDG +LRE+SRH S+E   + EID       +Q+ P+      D P
Sbjct:    4 NPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHSAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_EUBR3 (Spermidine synthase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=speE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.698e-24
Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  291 MWPGEAHSL------KVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            MW  + H++      ++++ LF G+SDYQ + VF+S  +GK++ LDG I  ++ DE  Y EM+TH+P+   PN K +L+IGGGDG V +E+ ++ SVE  D+ E DKM   V ++FFP+V   L+D
Sbjct:    3 MWFSQYHTVNVKLDVRIQEQLFSGQSDYQKIDVFKSYEFGKMVALDGEIVFSDTDEFIYDEMVTHVPMAVHPNAKRILIIGGGDGGVAKELIKYPSVEHIDVVETDKMFVDVCRRFFPEVACGLED 128          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP7 (Spermidine synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=speE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.267e-23
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  285 SPMWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            +P+W    H        V+ +L+  K+D+Q++++F +  +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  N K+VL+IGGGDG +LRE+SRH S+E   + EID       +Q+ P+      D P
Sbjct:    4 NPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHNAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOD6 (Spermidine synthase OS=Clostridium difficile (strain 630) GN=speE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.654e-23
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQF 620
            S+KV K LF+GKS +Q + VF S  +GK L +DG++ +T +DE  Y EMITH+P+ +  N K VLVIGGGDG  +RE+SR+  +EK D+ EIDKM   V K++
Sbjct:   16 SIKVNKHLFEGKSQFQRIDVFDSDEFGKFLTIDGLMMVTYKDEFIYHEMITHVPMATNLNIKKVLVIGGGDGGTVRELSRYPQIEKIDMVEIDKMVVDVSKEY 118          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_EUBE2 (Spermidine synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=speE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.822e-23
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            WFSE+    P     ++VEK LF G+SDYQ + VFQS  +GK L L+G +  +E+D   Y EM+ H+P+   P+ KNVL+IGGGDG V +E+ ++ ++E  DI E D M   V +++FP+    L+D
Sbjct:    4 WFSELHS--PHVKFDIRVEKQLFSGESDYQRIDVFQSPEFGKFLTLNGSVIFSEQDCFIYNEMVVHVPMSVHPDVKNVLIIGGGDGGVSKELLQYDNIENIDIVEQDNMFVDVCREYFPETASGLED 128          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE1_THETN1.825e-2445.61Spermidine synthase 1 OS=Thermoanaerobacter tengco... [more]
SPEE_ALKMQ5.232e-2443.86Spermidine synthase OS=Alkaliphilus metalliredigen... [more]
SPEE_BACHD7.426e-2443.48Spermidine synthase OS=Bacillus halodurans GN=speE... [more]
SPEE_LEPBP9.698e-2439.84Spermidine synthase OS=Leptospira biflexa serovar ... [more]
SPEE_LEPBA9.698e-2439.84Spermidine synthase OS=Leptospira biflexa serovar ... [more]
SPEE_KLEP39.698e-2441.09Spermidine synthase OS=Klebsiella pneumoniae (stra... [more]
SPEE_EUBR39.698e-2442.86Spermidine synthase OS=Eubacterium rectale (strain... [more]
SPEE_KLEP71.267e-2341.09Spermidine synthase OS=Klebsiella pneumoniae subsp... [more]
SPEE_CLOD61.654e-2351.46Spermidine synthase OS=Clostridium difficile (stra... [more]
SPEE_EUBE22.822e-2343.31Spermidine synthase OS=Eubacterium eligens (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
back to top