DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_MOOTA (Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=speE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.072e-22
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            WFSE+    P  A S+++ + L   K+ YQ + V  +  YG++L+LD +IQ T +DE  Y EMI H+PL + PNP+  LVIGGGDG V+REI +H S+EK  + EID       +++ P++   L D
Sbjct:    5 WFSELQT--PDLAISVRLNQTLHHEKTPYQELAVVDTEAYGRMLLLDNIIQTTVKDEFFYHEMIAHVPLNTHPNPRTALVIGGGDGGVVREIVKHPSIEKVTLVEIDARVVANAREYLPEIACGLDD 129          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ENT38 (Spermidine synthase OS=Enterobacter sp. (strain 638) GN=speE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.072e-22
Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE+SRH S+E   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVSRHKSIETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ERWT9 (Spermidine synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=speE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.400e-22
Identity = 50/118 (42.37%), Postives = 80/118 (67.80%), Query Frame = 3
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPD 629
            MW    H+       V+KI+++ K+D+Q++++F+++  G+V+ LDGV+Q TERDE  Y EM+TH+PL +   PK VL+IGGGDG +LRE+ RH ++E+  + EID       +Q+ P+
Sbjct:    6 MWYETLHTGFGQYFSVDKIIYREKTDHQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGAPKRVLIIGGGDGAMLREVCRHKNIEQITMVEIDAGVVTFCRQYLPN 123          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BACSU (Spermidine synthase OS=Bacillus subtilis GN=speE PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.400e-22
Identity = 48/117 (41.03%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  312 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPPGD 662
            ++KV K L   ++++Q++ + ++  +G +L LDG++  +E+DE  Y EM+ H+PL + PNP++VLV+GGGDG V+REI +H SV+K  + +ID    +  K+F P + G L DP  D
Sbjct:   17 TMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVD 133          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTH (Spermidine synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=speE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.829e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDV 632
            WF+E     P    + K +K L   K++YQ + V ++  +G++L+LDG+IQ T  DE  Y EMI H+PL +  NPK  LV+GGGDG  +REI +H S+EK  + EID+   +V K++ P++
Sbjct:    4 WFTEYQT--PTLGITCKTKKTLHSEKTEYQELAVIETEQFGRMLLLDGIIQTTVADEFVYHEMIAHVPLFTHKNPKKALVVGGGDGGSIREIVKHPSIEKAVLCEIDRRVIEVSKEYLPEI 122          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_CLOB8 (Spermidine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=speE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.389e-22
Identity = 50/118 (42.37%), Postives = 79/118 (66.95%), Query Frame = 3
Query:  291 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFP 626
            +W  E H      S+KVEK +   K+++Q + V ++  +G+   LDG++ +TE+DE  Y +MI H+P+ + PN KNVLVIG GDG  +RE++R+S+VEK D+ EIDK    + +++FP
Sbjct:    3 LWYTEQHTENVRFSIKVEKEIHTEKTEFQRIDVLEAKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTIRELTRYSTVEKIDMVEIDKRVVDICREYFP 120          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_BACWK (Spermidine synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=speE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.389e-22
Identity = 50/127 (39.37%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  270 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKD 650
            WF+E      G   + ++ + L   ++++Q + + ++  +G +LILDG++  TE+DE  Y EM+ H+PL + PNP+NVLV+GGGDG V+RE+ +H SV+K  + EID    +  KQ+ P + G L D
Sbjct:    4 WFTEKQTKHFGI--TARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHEMVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIAGALDD 128          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPP (Spermidine synthase OS=Yersinia pestis (strain Pestoides F) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +LF+ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPN (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +LF+ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPG (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +LF+ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132          
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_MOOTA1.072e-2242.52Spermidine synthase OS=Moorella thermoacetica (str... [more]
SPEE_ENT381.072e-2243.75Spermidine synthase OS=Enterobacter sp. (strain 63... [more]
SPEE_ERWT91.400e-2242.37Spermidine synthase OS=Erwinia tasmaniensis (strai... [more]
SPEE_BACSU1.400e-2241.03Spermidine synthase OS=Bacillus subtilis GN=speE P... [more]
SPEE_CLOTH1.829e-2242.15Spermidine synthase OS=Clostridium thermocellum (s... [more]
SPEE_CLOB82.389e-2242.37Spermidine synthase OS=Clostridium beijerinckii (s... [more]
SPEE_BACWK2.389e-2239.37Spermidine synthase OS=Bacillus weihenstephanensis... [more]
SPEE_YERPP3.120e-2243.75Spermidine synthase OS=Yersinia pestis (strain Pes... [more]
SPEE_YERPN3.120e-2243.75Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_YERPG3.120e-2243.75Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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