DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPE (Spermidine synthase OS=Yersinia pestis GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +LF+ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_YERPA (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            VE +LF+ K+++Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    K VL+IGGGDG +LRE+SRH ++E+  + EID    +  +Q+ P+      D P
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQYLPNHSAGAYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SHIFL (Spermidine synthase OS=Shigella flexneri GN=speE PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SHIF8 (Spermidine synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SHIB3 (Spermidine synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALTY (Spermidine synthase OS=Salmonella typhimurium GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALTI (Spermidine synthase OS=Salmonella typhi GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALSV (Spermidine synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALPK (Spermidine synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_SALPC (Spermidine synthase OS=Salmonella paratyphi C (strain RKS4594) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  291 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_YERPE3.120e-2243.75Spermidine synthase OS=Yersinia pestis GN=speE PE=... [more]
SPEE_YERPA3.120e-2243.75Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_SHIFL3.120e-2242.86Spermidine synthase OS=Shigella flexneri GN=speE P... [more]
SPEE_SHIF83.120e-2242.86Spermidine synthase OS=Shigella flexneri serotype ... [more]
SPEE_SHIB33.120e-2242.86Spermidine synthase OS=Shigella boydii serotype 18... [more]
SPEE_SALTY3.120e-2240.16Spermidine synthase OS=Salmonella typhimurium GN=s... [more]
SPEE_SALTI3.120e-2240.16Spermidine synthase OS=Salmonella typhi GN=speE PE... [more]
SPEE_SALSV3.120e-2240.16Spermidine synthase OS=Salmonella schwarzengrund (... [more]
SPEE_SALPK3.120e-2240.16Spermidine synthase OS=Salmonella paratyphi A (str... [more]
SPEE_SALPC3.120e-2240.16Spermidine synthase OS=Salmonella paratyphi C (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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