DY258681

Overview
NameDY258681
Unique NameDY258681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECOHS (Spermidine synthase OS=Escherichia coli O9:H4 (strain HS) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECODH (Spermidine synthase OS=Escherichia coli (strain K12 / DH10B) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECOBW (Spermidine synthase OS=Escherichia coli (strain K12 / BW2952) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO8A (Spermidine synthase OS=Escherichia coli O8 (strain IAI1) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO81 (Spermidine synthase OS=Escherichia coli O81 (strain ED1a) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO7I (Spermidine synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO5E (Spermidine synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO57 (Spermidine synthase OS=Escherichia coli O157:H7 GN=speE PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO55 (Spermidine synthase OS=Escherichia coli (strain 55989 / EAEC) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
[Close]
BLAST of DY258681 vs. ExPASy Swiss-Prot
Match: SPEE_ECO45 (Spermidine synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 3 
Query:  321 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLREISRHSSVEKNDIQEIDKMAFKVPKQFFPDVPGWLKDPP 656
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +LRE++RH +VE   + EID       +Q+ P+      D P
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDP 132
The following BLAST results are available for this feature:
BLAST of DY258681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SPEE_ECOHS3.120e-2242.86Spermidine synthase OS=Escherichia coli O9:H4 (str... [more]
SPEE_ECODH3.120e-2242.86Spermidine synthase OS=Escherichia coli (strain K1... [more]
SPEE_ECOBW3.120e-2242.86Spermidine synthase OS=Escherichia coli (strain K1... [more]
SPEE_ECO8A3.120e-2242.86Spermidine synthase OS=Escherichia coli O8 (strain... [more]
SPEE_ECO813.120e-2242.86Spermidine synthase OS=Escherichia coli O81 (strai... [more]
SPEE_ECO7I3.120e-2242.86Spermidine synthase OS=Escherichia coli O7:K1 (str... [more]
SPEE_ECO5E3.120e-2242.86Spermidine synthase OS=Escherichia coli O157:H7 (s... [more]
SPEE_ECO573.120e-2242.86Spermidine synthase OS=Escherichia coli O157:H7 GN... [more]
SPEE_ECO553.120e-2242.86Spermidine synthase OS=Escherichia coli (strain 55... [more]
SPEE_ECO453.120e-2242.86Spermidine synthase OS=Escherichia coli O45:K1 (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258681 ID=DY258681; Name=DY258681; organism=Citrus clementina; type=EST; length=1283bp
GGTGTCAAGACACTTAATAGTTGCCGCGGCATCCATGTAACGAAATACGA
GATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAAT
AATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGC
CGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAAT
AACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTAT
CTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCG
GTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCT
GATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCT
TATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATC
AAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCCAACCCGAAAAAC
GTTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCGGGAAATATCTCG
TCATTCTTCTGTTGAGAAAAATGACATCCAGGAAATTGATAAAATGGCCT
TTAAGGTCCCAAAACAATTTTTCCCTGATGTACCTGGTTGGTTGAAAGAT
CCCCCGGGTGACCCTCCATATTGGTGATGGGTTTGCTTTCGTGAAGGCCG
GTCGGGAAACCCCAGTCAACGTACTTAACCTCGAAATTCCTTACGACTAA
ATGGTCCCTCGCCAAAAGATCCTTATCCACCACCCATTCTTTACCTCGCT
CCCCCCTCCTTACCCCCCCCCACGCGGGCTACCCCAACACTCCCCAGCGG
GACACCCCCCCCTCTGGAACTCCCAGAATCGAACAACATACTGTACCCAT
CCTAACCACCAACCTCATCAATATCCGCCCCATCTCCGCGACGACTCCAC
CGCCACCAACCACACACACACTCGCTAGTCTTTCACTCCTCCTCCTCTCC
CTCTCAACATACCCTTTTTTTCCTCTCACTTTTTCCTCATCTCTTCCCAC
TCCCTCCTAACCCACCTAGTTTCTACACTATTAAATCCTCACGACATCGC
CCATTACTCATNCCCATGAATTCCGTCTTAACCCCTCCCTCTCCCGGACA
GACACGATGCCTGAGTCAAACTACCTCACCGCCCATCTCCCCGCTTACCC
CACCGCCCACACCTACAATCCACCCTACACTAACCCCCCTTTCCGCTCTA
TAACATTAGACAACTATATTGACCTCTCCTTTT
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