DY258684

Overview
NameDY258684
Unique NameDY258684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1094
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_PSEPU (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida GN=bkdA1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.595e-24
Identity = 65/190 (34.21%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  352 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNPCRLH-LSQQW 918
            RVLD+ G+  +G   + +  ++  +    M+  ++ DS +  AQRQ + SFY+ ++GEEAI  G A AL+  D   P YR+  +L+ R  +L +   Q+ +N+ D  KGRQ+PI Y  ++  + TIS  +ATQ  QAVG A +  ++     A A+ GDG T+   F   +     Y  P  L+ ++ QW
Sbjct:   56 RVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQW 244          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.666e-23
Identity = 69/196 (35.20%), Postives = 101/196 (51.53%), Query Frame = 1
Query:  310 RFIPESSEKRVPCFRVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            RF P + E      R++ + GE +   DF   +  E   ++Y  M+  +++D       R G+ SF     G EA  +  A A+    D++ P YR+ G+ L  G  L++   Q+ A KAD  KGRQMP H GSK LN+ T++SPIA+ +P A G A S+K+ +    AV   GDG TS G +   I   +  G P
Sbjct:    7 RFEPFTEEP----IRLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELFGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_BACST (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus stearothermophilus GN=pdhA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.132e-22
Identity = 66/190 (34.74%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  322 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            E   ++ P F++L++ GE++      ++S E   ++   MV  +++D       RQGR  FY  T G+EA  I S  AL  +DFILP YR+   ++W G  L     Q F        G Q+P     + +N +     I  Q  QA GVA  LKM  K A A+ YTGDGGTS G F   I    ++  P
Sbjct:   15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLY----QAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAP 195          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.132e-22
Identity = 65/182 (35.71%), Postives = 96/182 (52.75%), Query Frame = 1
Query:  352 RVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            R++ + GE +   DF   +  E   ++Y  M+  +++D       R G+ SF     G EA  +  A A+    D++ P YR+ G+ L  G  L++   Q+ A KAD  KGRQMP H GSK LN+ T++SPIA+ +P A G A S+K+ +    AV   GDG TS G +   I   +  G P
Sbjct:   17 RLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.337e-22
Identity = 61/188 (32.45%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YTGDGG+S G F   I   ++Y  P
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAAS (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.337e-22
Identity = 61/188 (32.45%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YTGDGG+S G F   I   ++Y  P
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAAN (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain N315) GN=pdhA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.337e-22
Identity = 61/188 (32.45%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YTGDGG+S G F   I   ++Y  P
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAAM (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.337e-22
Identity = 61/188 (32.45%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YTGDGG+S G F   I   ++Y  P
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAAC (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain COL) GN=pdhA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.337e-22
Identity = 61/188 (32.45%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YTGDGG+S G F   I   ++Y  P
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.135e-21
Identity = 61/188 (32.45%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD++G ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL ++DFILP YR+   ++W G  L       F       KG Q P     + +N ++    I  Q  Q  GVA+ LK   K+A A+ YTGDGG+S G F   I   S+Y  P
Sbjct:   18 TQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPL----TDAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGINFASAYKAP 196          
The following BLAST results are available for this feature:
BLAST of DY258684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ODBA_PSEPU4.595e-2434.212-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODBA_THET28.666e-2335.202-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_BACST1.132e-2234.74Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_THET81.132e-2235.712-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_STAAW7.337e-2232.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAS7.337e-2232.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAN7.337e-2232.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAM7.337e-2232.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAC7.337e-2232.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAES2.135e-2132.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258684 ID=DY258684; Name=DY258684; organism=Citrus clementina; type=EST; length=1094bp
GTTGTTCAATATCGAAAAAATTAAATGGCGATTTGGTTAACAAAATCAAG
AGCCATGGCCCAATGCTTACGGCAAAGAGTCGGTTTGCTGAGGATATTAA
GTGGCCAGAGTTGTTCATCCCCATCAACCATATTCCCACTTCAGCAATAT
AATTCACCATCACTTCCAAGCAAAACCCTTTTCTCGCCGGGGCGTTCCGA
GTCCACCGTTGCTGCCAATCAGCTGGATTCTTTGTCTTCCAGTGACAGCG
ATGATGATCATCAGGTCTTGGATTTTCCCGGAGGCAAAGTTGGATATACT
TCTGAAATGAGGTTCATTCCTGAGTCTTCAGAGAAAAGAGTGCCTTGTTT
TCGAGTTCTTGATGACAATGGAGAGCTAATCAAGGGCAGTGATTTTCAAC
AGGTGAGCAAGGAAGTTGCTGTAAAGATGTATAGCCATATGGTCACACTG
CAGGTAATGGACTCTGTATTGTACGAAGCACAAAGGCAAGGGAGATTTTC
TTTCTACCTTACAACAATTGGTGAAGAAGCAATCAACATAGGATCAGCAG
CTGCACTCAGCGCCGATGATTTTATCTTGCCTCAGTACCGAGAGCCTGGA
GTACTCTTATGGCGTGGCTACACATTGCAACAATTTGCAAACCAGGTGTT
TGCAAACAAGGCTGATGATGGGAAAGGCAGACAGATGCCAATTCATTATG
GGTCTAAAAAGCTTAACTACATCACCATATCGTCACCTATCGCTACACAA
CTTCCTCAAGCTGTTGGTGTGGCTTATTCTCTTAAAATGGAGAAAAAGGA
TGCCTGTGCAGTTGCTTATACTGGAGATGGCGGCACCAGTGGAGGGAGAT
TTTCATGCCGCATTGAACTTTGCAGCAGTTATGGAAACCCCTGTCGTCTT
CATCTGTCGCAACAATGGCTGGGCCCATAATACCAATATATCAAAAACAT
TTCCAAACGAAGGGTATTGGTTGTTAGGGGGCCGGGCATAAGGGATCCCA
AACCATAACAATTAAAAGGGAATGGAGGCCACTTTGCTGTTTTAAACCCC
CCAGTTTTCCGGCCGGCCTCCGGGGAAATGGGCGATTTCAAGTG
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