DY258684

Overview
NameDY258684
Unique NameDY258684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1094
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.135e-21
Identity = 61/188 (32.45%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD++G ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL ++DFILP YR+   ++W G  L       F       KG Q P     + +N ++    I  Q  Q  GVA+ LK   K+A A+ YTGDGG+S G F   I   S+Y  P
Sbjct:   18 TQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPL----TDAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGINFASAYKAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_STAAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.135e-21
Identity = 60/188 (31.91%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  328 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  Q  GVA++LK   K+A A+ YTGDGG+S G F   I   ++Y  P
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQTAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGINFAAAYKAP 196          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_BACSU (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus subtilis GN=pdhA PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 8.111e-21
Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  322 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            ++ +K+   F++L++ GE++  +    ++ +   ++   MV  +V+D       RQGR  FY  T G+EA  I +  AL  +DF+LP YR+   L+W G  L     Q F       +G QMP       +N ++    I  Q  Q  GVA  LK   K A A+ YTGDGG S G F   I    +Y  P
Sbjct:   17 DAIKKQFETFQILNEKGEVVNEAAMPDLTDDQLKELMRRMVFTRVLDQRSISLNRQGRLGFYAPTAGQEASQIATHFALEKEDFVLPGYRDVPQLIWHGLPLY----QAFLFSRGHFRGNQMP-----DDVNALSPQIIIGAQYIQTAGVALGLKKRGKKAVAITYTGDGGASQGDFYEGINFAGAYKAP 197          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_MYCGE (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma genitalium GN=pdhA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.188e-15
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  349 FRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRF 852
            ++V D+ G+LI  +    ++ E     Y  M   ++MD  +   QR G+   +   +GEEA+ +G    L+ +D++ P +R   ++L+RG   +Q       N+    KG Q+   Y +  +N ITI +    Q   A G+ Y L  +K+   AV   GDGGT+ G F
Sbjct:   14 YQVYDNEGKLIDPNHKITLTDEQLKHAYYLMNLSRMMDKKMLVWQRAGKMLNFAPNLGEEALQVGMGLGLNENDWVCPTFRSGALMLYRGVKPEQLLLYWNGNE----KGSQIDAKYKTLPIN-ITIGA----QYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAEGEF 172          

HSP 2 Score: 28.1054 bits (61), Expect = 3.188e-15
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWAHNT 934
            EG+F+ A+N A++ +   VF   NN +A +T
Sbjct:  169 EGEFYEAMNIASIHKWNTVFCINNNQFAIST 199          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_MYCPN (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma pneumoniae GN=pdhA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.102e-13
Identity = 45/168 (26.79%), Postives = 79/168 (47.02%), Query Frame = 1
Query:  349 FRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRF 852
            ++V D+ G+L+  +    +S E     +  M   ++MD  +   QR G+   +   +GEEA+ +G    L+ +D+  P +R   ++L+RG   +Q    ++ N  ++G   +        K   + I+  I  Q   A G+ Y L  +K    AV   GDGGT+ G F
Sbjct:   14 YQVYDNEGKLMDPNHKITLSNEQLKHAFYLMNLSRIMDKKMLVWQRAGKMLNFAPNLGEEALQVGMGMGLNENDWFCPTFRSGALMLYRGVKPEQLL--LYWNGNENGSKIE-------AKYKTLPINITIGAQYSHAAGLGYMLHYKKLPNVAVTMIGDGGTAEGEF 172          

HSP 2 Score: 27.335 bits (59), Expect = 2.102e-13
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWAHNT 934
            EG+F+ A+N A++ +   VF   NN +A +T
Sbjct:  169 EGEFYEAMNIASIHKWNSVFCINNNQFAIST 199          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_ACHLA (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.794e-13
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 1
Query:  361 DDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            D NG+++      ++ KE  +KMY   V  +  D    + QRQGR   Y   +G+EA  IG AAA+   D+  P YRE   LL+RG  L+      + N+    K   + I         +  +  I +Q   A G+A + K+ K +       GDGGT+ G F   +   +S+  P
Sbjct:    1 DQNGKVVNEKMEPKLPKETLLKMYKTAVLGRNADIKALQYQRQGRMLTYAPNMGQEAAQIGMAAAMEPQDWNSPMYRELNTLLYRGDKLENVFLYWYGNERGSIKPEGVKI---------LPTNIIIGSQSNIAAGLAMASKIRKTNEVTAFTIGDGGTAHGEFYEGLNFAASFKAP 168          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.262e-12
Identity = 44/164 (26.83%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  373 ELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSV---LYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIH-YGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGR 849
            +L  G D    V+KE AV  Y+ M+T++ M+S    LY+ ++   F    +  G+EA  +G+ AA+ A D  +  YR  G     G ++ +   ++      +  G+   +H YG    N+   +  +  Q P   G+A+++K  K+    +   GDG T+ G+
Sbjct:   41 KLDSGPDINVHVTKEDAVHYYTQMLTIRRMESAAGNLYKEKKVRGFCHLYS--GQEACAVGTKAAMDAGDAAVTAYRCHGWTYLSGSSVAKVLCELTGRITGNVYGKGGSMHMYGE---NFYGGNGIVGAQQPLGTGIAFAMKYRKEKNVCITMFGDGATNQGQ 199          

HSP 2 Score: 35.8094 bits (81), Expect = 6.262e-12
Identity = 14/52 (26.92%), Postives = 28/52 (53.85%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWAHNTNISKTFPNEGYWLLGGRA*GI 997
            +G    ++N A + + PV+++C NNG+   T  +++  +  Y+  G    GI
Sbjct:  197 QGQLFESMNMAKLWDLPVLYVCENNGYGMGTAAARSSASTDYYTRGDYVPGI 248          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 3.885e-11
Identity = 42/159 (26.42%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  400 QVSKEVAVKMYSHMVTLQVMD---SVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKA--DDGKGRQMPIH----YGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGR 849
            + SK   ++MY  MV ++ M+     LY+A++   F     ++G+EAI +G   A++  D I+  YR  G    RG +++    ++   +A    GKG  M ++    YG   +        +  Q+P   G+A++ + + +DAC+    GDG ++ G+
Sbjct:   75 ETSKATLLQMYKDMVIIRRMEMACDALYKAKKIRGFCHL--SVGQEAIAVGIENAITKLDSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGGSMHLYAPGFYGGNGI--------VGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQ 223          

HSP 2 Score: 29.261 bits (64), Expect = 3.885e-11
Identity = 14/46 (30.43%), Postives = 21/46 (45.65%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWAHNTNISKTFPNEGYWLLG 979
            +G    + N A +   PVVF C NN +   T  S++     Y+  G
Sbjct:  221 QGQVFESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRG 266          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPT_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 5.054e-11
Identity = 38/153 (24.84%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  403 VSKEVAVKMYSHMVTLQVMDSV---LYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIH-YGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGR 849
            V+KE A++ Y+ M T++ M++    LY+ ++   F    +  G+EA  +G  AA+   D  +  YR  G     G  + +   ++      +  G+   +H YG    N+   +  +  Q P   G+A+++K +K+    +   GDG T+ G+
Sbjct:   47 VTKEDALRYYTQMQTIRRMETAAGNLYKEKKVRGFCHLYS--GQEACAVGMKAAMEPGDAAITAYRCHGWTYLSGSPVAKVLCELTGRITGNVYGKGGSMHMYGE---NFYGGNGIVGAQQPLGTGIAFAMKYKKQKNVCITLFGDGATNQGQ 194          

HSP 2 Score: 38.1206 bits (87), Expect = 5.054e-11
Identity = 13/46 (28.26%), Postives = 28/46 (60.87%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWAHNTNISKTFPNEGYWLLG 979
            +G  + ++N A + E PV+++C NNG+   T+ +++  +  Y+  G
Sbjct:  192 QGQLYESMNMAKLWELPVLYVCENNGYGMGTSAARSSASTDYYTRG 237          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 8.511e-11
Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  403 VSKEVAVKMYSHMVTLQVMDSV---LYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK-MEKKDACAVAYTGDGGTSGGR 849
            +++E A+K Y  M  ++ M+S    LY+ ++   F    +  G+EA  +G  AA++  D ++  YR  G     G T+ +   ++    A +  G+   +H  +K  N+   +  +  Q P   GVA ++K  E+K+ C   Y GDG  + G+
Sbjct:   50 LNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLYS--GQEACAVGMKAAMTEGDAVITAYRCHGWTWLLGATVTEVLAELTGRVAGNVHGKGGSMHMYTK--NFYGGNGIVGAQQPLGAGVALAMKYREQKNVCVTLY-GDGAANQGQ 197          

HSP 2 Score: 36.5798 bits (83), Expect = 8.511e-11
Identity = 16/52 (30.77%), Postives = 26/52 (50.00%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWAHNTNISKTFPNEGYWLLGGRA*GI 997
            +G    A N A + + PV+F+C NNG+   T   ++  +  Y+  G    GI
Sbjct:  195 QGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDYVPGI 246          
The following BLAST results are available for this feature:
BLAST of DY258684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ODPA_STAEQ2.135e-2132.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAR2.135e-2131.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACSU8.111e-2132.63Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_MYCGE3.188e-1529.76Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_MYCPN2.102e-1326.79Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ACHLA2.794e-1329.94Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ASCSU6.262e-1226.83Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_YEAST3.885e-1126.42Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPT_ASCSU5.054e-1124.84Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_CAEEL8.511e-1126.80Probable pyruvate dehydrogenase E1 component subun... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258684 ID=DY258684; Name=DY258684; organism=Citrus clementina; type=EST; length=1094bp
GTTGTTCAATATCGAAAAAATTAAATGGCGATTTGGTTAACAAAATCAAG
AGCCATGGCCCAATGCTTACGGCAAAGAGTCGGTTTGCTGAGGATATTAA
GTGGCCAGAGTTGTTCATCCCCATCAACCATATTCCCACTTCAGCAATAT
AATTCACCATCACTTCCAAGCAAAACCCTTTTCTCGCCGGGGCGTTCCGA
GTCCACCGTTGCTGCCAATCAGCTGGATTCTTTGTCTTCCAGTGACAGCG
ATGATGATCATCAGGTCTTGGATTTTCCCGGAGGCAAAGTTGGATATACT
TCTGAAATGAGGTTCATTCCTGAGTCTTCAGAGAAAAGAGTGCCTTGTTT
TCGAGTTCTTGATGACAATGGAGAGCTAATCAAGGGCAGTGATTTTCAAC
AGGTGAGCAAGGAAGTTGCTGTAAAGATGTATAGCCATATGGTCACACTG
CAGGTAATGGACTCTGTATTGTACGAAGCACAAAGGCAAGGGAGATTTTC
TTTCTACCTTACAACAATTGGTGAAGAAGCAATCAACATAGGATCAGCAG
CTGCACTCAGCGCCGATGATTTTATCTTGCCTCAGTACCGAGAGCCTGGA
GTACTCTTATGGCGTGGCTACACATTGCAACAATTTGCAAACCAGGTGTT
TGCAAACAAGGCTGATGATGGGAAAGGCAGACAGATGCCAATTCATTATG
GGTCTAAAAAGCTTAACTACATCACCATATCGTCACCTATCGCTACACAA
CTTCCTCAAGCTGTTGGTGTGGCTTATTCTCTTAAAATGGAGAAAAAGGA
TGCCTGTGCAGTTGCTTATACTGGAGATGGCGGCACCAGTGGAGGGAGAT
TTTCATGCCGCATTGAACTTTGCAGCAGTTATGGAAACCCCTGTCGTCTT
CATCTGTCGCAACAATGGCTGGGCCCATAATACCAATATATCAAAAACAT
TTCCAAACGAAGGGTATTGGTTGTTAGGGGGCCGGGCATAAGGGATCCCA
AACCATAACAATTAAAAGGGAATGGAGGCCACTTTGCTGTTTTAAACCCC
CCAGTTTTCCGGCCGGCCTCCGGGGAAATGGGCGATTTCAAGTG
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