DY258748

Overview
NameDY258748
Unique NameDY258748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.222e-16
Identity = 58/166 (34.94%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   D  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GLV+  V+  G IY P        + ++    GV     + L + YPT+   P  I N  K V+  A   +Y
Sbjct:   92 KEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.055e-15
Identity = 58/166 (34.94%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFSYGL++  VY  G +Y P        + ++    GV     + L + YPTL   P  I N  K V+  A   +Y
Sbjct:   92 KEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.683e-15
Identity = 57/166 (34.34%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   D  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GL++  VY  G IY P        +       GV     + L + YPT+   P  + N  K V+  A   +Y
Sbjct:   92 KEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 5.978e-15
Identity = 56/166 (33.73%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GL++  V+  G IY P       ++ +     GV     + L + YPT+   P  I N  K V+  +   EY
Sbjct:   92 KEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.020e-14
Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GL++  V+  G IY P       ++ +     GV     + L + YPT+   P  I N  K V+  +   +Y
Sbjct:   92 KEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.332e-14
Identity = 56/166 (33.73%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GLV+  V+  G IY P        + +     GV     + L + YPT+   P  I N  K V+  +   +Y
Sbjct:   92 KEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.332e-14
Identity = 56/166 (33.73%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GLV+  V+  G IY P        + +     GV     + L + YPT+   P  I N  K V+  +   +Y
Sbjct:   92 KEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.739e-14
Identity = 55/166 (33.13%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GL++  V+  G IY P        + +     GV     + L + YPT+   P  I N  K V+  +   +Y
Sbjct:   92 KEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDY 257          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.739e-14
Identity = 53/161 (32.92%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAA 621
            K +L E+  + ++ +  APA    +   D  + P++ G+ P  TSFF    I T I  G +E +  V LI + D+VG+SE+ LL    + PFSYGLVV  VY  G +Y P           +   +GV     ++L V+YPTL      + N  + ++G A
Sbjct:   92 KEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVA 252          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.967e-14
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATLL    I PFS+GLV+  V+  G IY P        + +     GV     + L   YPT+   P  I N  K V+  +   +Y
Sbjct:   92 KEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVLALSVETDY 257          
The following BLAST results are available for this feature:
BLAST of DY258748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RLA0_CHICK9.222e-1634.9460S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_ICTPU2.055e-1534.9460S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_RANSY2.683e-1534.3460S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_MOUSE5.978e-1533.7360S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_RAT1.020e-1433.1360S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_HUMAN1.332e-1433.7360S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN1.332e-1433.7360S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_PIG1.739e-1433.1360S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_CAEEL1.739e-1432.9260S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0L_HUMAN2.967e-1433.7360S acidic ribosomal protein P0-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258748 ID=DY258748; Name=DY258748; organism=Citrus clementina; type=EST; length=1228bp
TGAAATTGAGGATTGCCGTGGAGGTTATAACCGCTGGTGGCCGTGGAGGT
TATAACGGCGCGTGGCCGATGGTGGCTATGGAGGTGGTGGGGGCTATGGC
GGTGGTGGGGGCTATGGCGGTGTTGGGTTGATTGGCCGAAGGTTGAGTTG
ATAGAGTTGATGGAGGAGTGGGTTGATTGGAAGGTTGTAGCTCCGGCTCT
TCGCTGGTAGGTCTGCTCAATTGATGGGGTTGTTCTTCCCGAGGACGAAG
GTCTCAACCCCTCCTAGACCTCCTTCTTCCATGTGCATAACATTCTCACC
GTGATTATGGCGGGTATTGTTGAGTCTATCACGCCTGTGGTGCTTATTGT
GAAGGTGGACAGGGTGGGATCTTCTGAGGCTACCCTGCTTGCACACTTTG
TGATTAGACCTTTCTCTTATGGTCTTGTTGTCCTGCCAGTCTATTCTAAA
GGGTTCATCTACTGTCCATGAGGTCGTAGAACTGACTGACGATCATCTAA
TGAAGAAGTTCGTGCAGGTGTATCGACGAGCACCGATCTGGCACTTGGCG
TATCATACCCGACGCTGAACGATGCTCCACGCTTGATCTACAATGTATAG
AAGATTGTGGTAGGGGCTGCTCATGCTCCTGAGTATTAAATCTGTTAGGC
CGATACAGAGACGGAGAACGTGTACGTACTTATACAGCTTGCTGGAAGCT
GGTGTACATCGTAGCTATGATGACGTGAATGTTCATCTGCTTGTTGCAAC
AATGTAAGAAATCTTATTACAGACTCTCTTCTGATGCTAATAAGGATTCG
GCCCTACACGTGGCTAAACTTAGATACCGTGTAGGTGGATCTCTAAAAAG
GTGAAATACAAGCAACAAAGATTGCGTTGGGGTTTTACTCCTTATGGATA
GTAGACAACCCCAGGGTGGAGTTTTTGCGCATTTCCCCCTGTGTTCCGGA
AAAATAACACCCATTTAAAATTTTATTTTATAGTAAAAAAAATTTCTGGG
GCCTAGATGCCAAAGTGTGGCTCTATATAACAAGGAAAAAACTTTCCCAT
TTGTCTTTTTGTAAAGAAAACAAAAATAATACAAAAGGACAAAAAAAAAA
AAAACTATTATTTTTTGTAACCTTCGGTGGGAAGAAAAAAAAACCCTACG
TCGTTGTGAGTACTGGAAAATTTAGTGGGTGGCGAAGCCAACCCACGCGG
GCCGGTCCCTTTCTCGTCCTTCTCACCT
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