DY258748

Overview
NameDY258748
Unique NameDY258748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.609e-14
Identity = 57/169 (33.73%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  139 KVELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATL---LAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            K +L E+ +  +  KV A A    +   +  V  ++ GL P  TSFF    I T I  G +E ++ V LI   D+VG+SEATL   L    I PFSYGL++  VY  G +Y P        + ++    GV     + L + YPTL   P  I N  K V+      +Y
Sbjct:   92 KEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDY 260          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.472e-13
Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  145 ELIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            +L E+ E  +   + APA    +  +D  V   + G+ P  TSFF    I T I  G +E  + V L+ K  +VG SEATLL    I PF+YG+ VL +Y +G ++ P             + +  S  T ++LG +YPT+      + N  K +V  + A EY
Sbjct:   92 DLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEY 255          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.186e-12
Identity = 52/156 (33.33%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  181 KVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVR----AGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            +V APA    +   D +V   + G+ P  TSFF   NI T I  G VE ++   ++   DRV +S ATLL    I PF Y + V  V+ +G ++     R D   +++ V      G+S    L+LG   PT    P +I +  K ++GA+ A EY
Sbjct:  113 RVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFL----REDLSITDDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTLLGASVATEY 264          
BLAST of DY258748 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.932e-11
Identity = 50/163 (30.67%), Postives = 75/163 (46.01%), Query Frame = 1
Query:  148 LIELMEEWVDWKVVAPALRW*VCSIDGVVLPEDEGLNPS*TSFFHVHNILTVIMAGIVESITPVVLIVKVDRVGSSEATLLAHFVIRPFSYGLVVLPVYSKGFIYCP*GRRTD*RSSNEEVRAGVSTSTDLALGVSYPTLNDAPRLIYNV*KIVVGAAHAPEY 636
            L E+    V  +V APA    V   D  V   + G+ P  TSFF    + T I  G +E ++ V ++   ++VG SEA+LL    I PF++GL V+ VY  G ++                 + VST   ++L + YPTL      + N  K ++  A A  Y
Sbjct:   93 LTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASY 255          
The following BLAST results are available for this feature:
BLAST of DY258748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RLA0_DANRE6.609e-1433.7360S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_SCHPO1.472e-1332.3260S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_TRYCR6.186e-1233.3360S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_YEAST8.932e-1130.6760S acidic ribosomal protein P0 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258748 ID=DY258748; Name=DY258748; organism=Citrus clementina; type=EST; length=1228bp
TGAAATTGAGGATTGCCGTGGAGGTTATAACCGCTGGTGGCCGTGGAGGT
TATAACGGCGCGTGGCCGATGGTGGCTATGGAGGTGGTGGGGGCTATGGC
GGTGGTGGGGGCTATGGCGGTGTTGGGTTGATTGGCCGAAGGTTGAGTTG
ATAGAGTTGATGGAGGAGTGGGTTGATTGGAAGGTTGTAGCTCCGGCTCT
TCGCTGGTAGGTCTGCTCAATTGATGGGGTTGTTCTTCCCGAGGACGAAG
GTCTCAACCCCTCCTAGACCTCCTTCTTCCATGTGCATAACATTCTCACC
GTGATTATGGCGGGTATTGTTGAGTCTATCACGCCTGTGGTGCTTATTGT
GAAGGTGGACAGGGTGGGATCTTCTGAGGCTACCCTGCTTGCACACTTTG
TGATTAGACCTTTCTCTTATGGTCTTGTTGTCCTGCCAGTCTATTCTAAA
GGGTTCATCTACTGTCCATGAGGTCGTAGAACTGACTGACGATCATCTAA
TGAAGAAGTTCGTGCAGGTGTATCGACGAGCACCGATCTGGCACTTGGCG
TATCATACCCGACGCTGAACGATGCTCCACGCTTGATCTACAATGTATAG
AAGATTGTGGTAGGGGCTGCTCATGCTCCTGAGTATTAAATCTGTTAGGC
CGATACAGAGACGGAGAACGTGTACGTACTTATACAGCTTGCTGGAAGCT
GGTGTACATCGTAGCTATGATGACGTGAATGTTCATCTGCTTGTTGCAAC
AATGTAAGAAATCTTATTACAGACTCTCTTCTGATGCTAATAAGGATTCG
GCCCTACACGTGGCTAAACTTAGATACCGTGTAGGTGGATCTCTAAAAAG
GTGAAATACAAGCAACAAAGATTGCGTTGGGGTTTTACTCCTTATGGATA
GTAGACAACCCCAGGGTGGAGTTTTTGCGCATTTCCCCCTGTGTTCCGGA
AAAATAACACCCATTTAAAATTTTATTTTATAGTAAAAAAAATTTCTGGG
GCCTAGATGCCAAAGTGTGGCTCTATATAACAAGGAAAAAACTTTCCCAT
TTGTCTTTTTGTAAAGAAAACAAAAATAATACAAAAGGACAAAAAAAAAA
AAAACTATTATTTTTTGTAACCTTCGGTGGGAAGAAAAAAAAACCCTACG
TCGTTGTGAGTACTGGAAAATTTAGTGGGTGGCGAAGCCAACCCACGCGG
GCCGGTCCCTTTCTCGTCCTTCTCACCT
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