DY258751

Overview
NameDY258751
Unique NameDY258751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1221
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:1104..2325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.048e-11
Identity = 55/172 (31.98%), Postives = 79/172 (45.93%), Query Frame = 1
Query:    4 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            + I GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTPD++  F +FVT   R P  G A L P  +I    V     T     S   G            LP+  TC N LKLP YS K ++ +KL YAIS   G F+LS
Sbjct:  898 ALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTG-FELS 1068          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.369e-11
Identity = 52/169 (30.77%), Postives = 76/169 (44.97%), Query Frame = 1
Query:    1 ESFIFGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            ++F  GFN++     LQ F   EL+ LLCG +E+    W+  A+  H      Y   S  I+   + + E   +++    QFVTG  RLP GG A L                      GP +        ++ LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  755 QAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL------------------MGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 899          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.369e-11
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   46 LQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            +++F   EL  L+ G R+  +   L  + ++  GY  +   IV+  E++ EF  +++  F +FVT  P+ P  G   L+PK  I            + GT         LP+  TC N LKLP Y  K I+ +KL+YAI+ G   FDLS
Sbjct:  780 MEMFNSIELQMLISGERDNIDLDDLKSNTEYG-GYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKALDPKFGI-----------RNAGTEKYR-----LPTASTCVNLLKLPDYRNKTILREKLLYAINSG-ARFDLS 910          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.049e-11
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 1
Query:    4 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            + I GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTP+++  F +FVT   R P  G A L P  +I    V     T     S   G            LP+  TC N LKLP YS K ++ +KL YAIS   G F+LS
Sbjct:  900 ALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTG-FELS 1070          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.049e-11
Identity = 47/158 (29.75%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    4 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +F  GF+ V    +L +  P E++ L+CG  EL +  AL    ++D GY      I    +++  F  + Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +++ + +KL+  IS  +G
Sbjct:  633 AFYCGFHSVCASNALMLLRPEEVEILVCGSPEL-DMHALQRSTQYD-GYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNWLPVAHTCFNQLCLPPYKSRKDLKQKLIIGISNSEG 770          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: HACE1_HUMAN (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.049e-11
Identity = 45/163 (27.61%), Postives = 82/163 (50.31%), Query Frame = 1
Query:    4 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            +F+ GF+     + +Q+F  +EL+ LL G  E+ + +   ++ ++  GY  + P I    E++ + T +++    QFVTG+ R+P GG A +     +     +  P T +            LP+  TC N LKLP Y +KEI+  +L+ A+  G   + ++
Sbjct:  759 AFLQGFHMFIPPSLIQLFDEYELELLLSGMPEI-DVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.792e-11
Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   16 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFD--HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            G N++   + LQIF  +ELD LL G+R++     + +  +F     YT     ++   E++ E++P+++    QF TG  RLP  G   +         H S  P      T         LP   TC N L +PPY++KE + +KL  AI E  G
Sbjct:  528 GLNELIPDSVLQIFNENELDTLLNGKRDI----DVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDM---------HGSDGPRKF---TIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAG 667          
BLAST of DY258751 vs. ExPASy Swiss-Prot
Match: HACE1_MOUSE (E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.792e-11
Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 1
Query:    4 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            +F+ GF+     + +Q+F  +EL+ LL G  E+ +     ++ ++  GY  + P I    E++ + T +++    QFVTG+ R+P GG A +     +     +  P T +            LP+  TC N LKLP Y +KEI+  +L+ A+  G   + ++
Sbjct:  759 AFLQGFHMFIPPSLIQLFDEYELELLLSGMPEI-DVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909          
The following BLAST results are available for this feature:
BLAST of DY258751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
UBE3B_HUMAN1.048e-1131.98Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
ITCH_HUMAN1.369e-1130.77E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]
HUL5_YEAST1.369e-1132.89Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
UBE3B_MOUSE3.049e-1131.40Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
HECD2_MOUSE3.049e-1129.75Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
HACE1_HUMAN3.049e-1127.61E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]
PUB2_SCHPO6.792e-1130.77E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
HACE1_MOUSE6.792e-1127.61E3 ubiquitin-protein ligase HACE1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258751 ID=DY258751; Name=DY258751; organism=Citrus clementina; type=EST; length=1221bp
GAATCTTTTATATTTGGATTCAATCAGGTCTTTGACATCACATCATTACA
AATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGT
TGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGGATAC
ACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATT
CACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTC
GTCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTC
AGAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCC
TTCGGAATCAGCGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATT
ACCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTG
GTTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCT
CAAAACTAACCGATGGACCTTTGTATATTAATATATGTGTCATCAAGTCA
ATTCTCTTACCTGGGGATTATTCATCTTTGAAAGTAGCATCATATTTCAG
TCAAATAATGGCTGCTTTTCACTGCCCTTGTATCAATGTTCACATCATTG
GCAAGTTGATTTTTTTTGTTTCAGGTCCGACTTCAGGCTGCCCCAGTGCC
ACACTCTCTCAACAGAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTG
GCTGCTGCTAGGACTTTGCATATAAATAGGAAACTTAAAATTTTTGTCTT
TTTTCCCTCATTGACAAGTTATTGGCTGCAGAATCAACTTAACATGGATG
GAATAAAAATGATGGGAAAGAAAAAAAAATTGGTGAAAATGTATGCCCTA
ATTTAAACCCCAATTTCCTTTCCAAAAAAAAATAAAAAAAAAAACCCCCA
CTTTTCTTGGACAAATGTGGGCCATTTATAAAAAAGGCTTGGGCTTACCT
ATTTTGTTGCCACCAAAACCGGTCCCCCTTTCCCGCCAAAAAAAAAATCC
TTTAATTTTTTCCACACCCAGCCTAAAAACACCCCCCCAAACTAGAAACC
CCAATAATAAAAGGGGCGCACAAAAATGCGCTTTCCCCCGGCGCCCACCC
TCTTTGGCCCCCCGGGCTGCACCTCAAAAAAACACCCCTCCTGAAATGGT
TCTATTCCTCCTTTGACTAAC
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