DY258754

Overview
NameDY258754
Unique NameDY258754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1246
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258754_ssr149 microsatellite DY258754_ssr149:149..168. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258754_ssr174 microsatellite DY258754_ssr174:174..205. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258754_ssr217 microsatellite DY258754_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10162 contig Ccv1_Contig10162:2..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.293e-14
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            +   A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   58 INGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.108e-14
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            A+TT DRQTACNCLKQ + S+P +N NNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   64 AKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.108e-14
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            + +AA+TTPDRQ AC CLK A  SI  +N  NA   P  CGVSIPYKIS STDCSKV+
Sbjct:   59 LNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.108e-14
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 3
Query:  228 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            AAA TT DRQ ACNCLK AAG+I NLNP NA  LP  C V+IPYKIS +T+C+ ++
Sbjct:   62 AAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.108e-14
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  231 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:   60 SARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.672e-14
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   64 ARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.672e-14
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   64 ARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.486e-13
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            ARTTPDRQ AC CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   64 ARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 3
Query:  231 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:   37 AAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.535e-13
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  231 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            AARTT DR+ ACNCLK AA  +  LN  NA  +P  CGVSIPY IS STDCS+V
Sbjct:   66 AARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
The following BLAST results are available for this feature:
BLAST of DY258754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
NLTP_PYRCO2.293e-1458.62Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP_PRUAV5.108e-1462.96Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN5.108e-1463.79Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP3_LENCU5.108e-1464.29Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP1_TOBAC5.108e-1467.27Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTPB_BRAOT6.672e-1468.52Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP2_BRANA6.672e-1468.52Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_BRANA1.486e-1366.67Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
LTP1_MORNI1.941e-1367.27Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_MAIZE2.535e-1364.81Non-specific lipid-transfer protein OS=Zea mays PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258754 ID=DY258754; Name=DY258754; organism=Citrus clementina; type=EST; length=1246bp
TTTCTTTTATCATAGTAGTGCTGTTGAGTTTTAAATTCACTCTGTATCTT
TGTCCTATGGAGACCGCTATGTATTAGTATTATATAGTGCTTAACCTTCC
GTAATGGTAGAAGTGACTTATACATCATTTGCAATTGGAAATATTTTCAT
ATATATATATATATATATGTATGTGTATGTATGTATGTATGTATGTATGT
ATGTATATTTGTGTGTGGTGGGTGGGTGCGGCCGCCAGAACCACACCTGA
CCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCTA
ACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGC
ATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGAAC
AGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAAA
TGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTAC
ACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTAT
TGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTAA
ATGAAATCTTGCCTTGTGTTCCAAAAAAACAACAAACAGAAAGACAACTC
AATCAGGACACTTTGAAAAAAGACATAATAATAAACATACTTGTTTGCAC
TACTATATATCACACTCCCCCCCTTTTTTGGTAAAAAGTTGGATATAAAA
GAAGACATTTCTATTATTTTTTGTGCCGAAACTGGCCTTTTCCGTAAAAG
AAAAAACTTTTTTTCCCCCCCCGCGAATCCCCCCCTAAAGGGGGCGTTAA
AAAGGGTGTTTTAGTTTTTCGGGGCAGCCCCTGGCCCGGGTTTAAAAAAC
TCTTGTATGTTTTTGCCCCAAAAACACAATTTTCTCCCAATGGGAAAAAC
TCCCTTGGCGACCAAAAAGAAAAGACACACTTTTTACTCAACTGGGNTTT
AACTTTNACTATTTTTTTAAAAAACTGCGTCGGGTATAAGAGGAGAAGAA
AAAACACCCAGGGACGTCCTTCAAAAAAGAGGGAGGATAATGTGGTTGAT
GGTGGGTGCAGATATACCCCTACCACTCCCCACACACTACCAAAACCAAT
ATATACTATATTATCTTTCCCCCCCCTCCACCCAAATAAAAAATATGTAA
TATTTAAATTTGCAATTGAAAAAGAAAAACTCCACCACATCATCGA
back to top